Mdes002275.1
Basic Information
- Insect
- Mayetiola destructor
- Gene Symbol
- -
- Assembly
- None
- Location
- GL501493.1:1726267-1728596[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.08 6.7 7.7 0.3 3 23 113 134 111 134 0.87 2 13 0.19 15 6.5 1.3 1 23 255 277 255 277 0.89 3 13 0.029 2.4 9.1 0.0 1 19 282 300 282 300 0.96 4 13 1.1 92 4.1 1.1 6 23 319 336 315 336 0.93 5 13 0.13 11 7.1 2.1 1 23 349 372 349 372 0.91 6 13 0.0028 0.23 12.3 0.2 1 23 414 436 414 436 0.95 7 13 0.025 2.1 9.3 0.5 1 23 440 465 440 465 0.95 8 13 0.00058 0.049 14.4 0.2 2 21 472 491 471 492 0.95 9 13 0.0001 0.0085 16.8 1.7 1 22 499 520 499 520 0.97 10 13 4e-06 0.00034 21.2 0.9 1 23 526 548 526 548 0.99 11 13 0.00027 0.023 15.5 0.4 1 23 554 576 554 576 0.98 12 13 0.00037 0.031 15.0 3.4 1 23 582 604 582 604 0.98 13 13 8.8e-05 0.0074 17.0 5.6 1 23 610 633 610 633 0.97
Sequence Information
- Coding Sequence
- ATGGCAGATACAAATTATGAATTGGATATAAATCCAAAAGAAGTGTGTCGCCTGTGTTTGGCACAACCAGCCGAATTGTTTAATATTTACTCAAATTCAATAGTGGACGGTTATATTATATCGGTGCCAGATATGCTCAAATATACAGTGAATATTGCCGTGGCAACGGATGACAAATTACCAGACAAAATTTGTAGTGAATGCAAAAAACAGATCATCACATTTTACACGTTTAAGCAAAAAACGAAACGTACCGAAAAATCATTGTTTTCCATGTTCAAGCCAATGGTTCAGTTGCCCAAACAAGAGAAAAAGCAGAACACCGAAGCCGTTCATTGTACAATTTGCGATTTAATATTCAGTGATGATCAAGCATATAACATTCATTATGGGCAAAATCATCCGGAAATATTGGATGCAATCGAACCATCGTGCAATAAATTACCCGACATTGAAACATACACATTTGAAGAGGGCTATGCAAATAGCAATGACAGTGGCACCGAAACAAAAATCGATGAAATCGATATGTTGACAGACGTAATAGAATCGAGTCCACCTCGAAATAAGCGAACAGCAACACGGCAACTACGGACACGAGCGGCTAAAAAACGAATTGTTGAAATTCCATCGACATCGCAAGCAATTCATTTCAAATCGGAAAGTGAATTGGAAGAGGCGTTCGATTCGACTGATGAAAACTATATTATTGCGGCCGATGAAGAGCAACAAGAGGCCACCGAAGATGATTGCCTTGAATTGTATGAATGTCCCGTTTGTGCAACGCAATTTGTTAACAAATTGGATTATTTGAATCATTGTAAGGAGCACGGTGGCATCGAATTTCAATGTGATGGCTGCGGTTCTATGTTTACCGAAGAAGAAGCTCTTTTAAGTCATGATTGTATGGGTTACGATGAACGGCTGACCGAAGAAGATTTATTTTGTGTTCCGTGTAATAAACGATTGAAATCGGGAACTCAATTGAATCAACACAATAAAATGCACGATTCAATGACTATGATTTTGGCGCATACGGAATTCTTTTCGTGTCATGATTGTTGCCTAATGTTTATCACGAAAATCGATCTAACGGAACACAATGCGGTAAATCATCCGGATAAGATAAGCAAAGAAATGATGGACGATGATGCATCCGATGGTATAACAAATGTTGATGAATCGTGTACGGATTATCAGTTTTTGGATGATGATAAACAAGATTTTAAAGATTTACCGTATTCGTGTGGTGTTTGTACTGAATCCTATTCAAATATTATGGAACTGAAAAATCATGTTATTTTCCATGCAACTAAATATCCGTGTCCGATTTTTGAGTGCGGTTGCCAATATGATCAATTGTCACGACTTAATATTCATGTTTTGAACAAACATCTCAACAAACAAAATATGCAGTGTTTCCATTGTGGCATACCATTTCAAACGTACGATGAATTGCAGGCCCATTTGAAAAATAATTGCAAAGAGAAAAAATTCAAATGCTATGAATGCGATAAGAAATTTTTCTCAAAGAAAGCATTGGTCACACATTTGAAAACGTTACGTGAAAAAAAGTTCAAGTGTAAATTGTGCGAAAAATTGTTTAAACAAGCCGGCGAACTGAAAATTCATCTTCGATCACACACAAATGAGCGCCCATTCGAGTGCACCATTTGCGGAAACAAATATAAAACGAGTTCAATGAGAGCAGCACACATGGACTCTCATATCAATGGAAAGACTTTTGAGTGTACAATGTGCGATAAGAAACTTCAATCTCGTACCAGCTATCGAAATCACATGAAACGCCACACCGACGAAAAGCGCTTCGAATGTTCATACTGCAGCAAAAAGTTCTTCACGAATTATCATCTCAAATTGCATCAATCGAAAATCCACAAAAATCTCATAAATGAAGATGTAAATGCTGTTCTGGAAGAAGGAGTCGACGAAAGTAATGATATGATCGTTTACGAATAG
- Protein Sequence
- MADTNYELDINPKEVCRLCLAQPAELFNIYSNSIVDGYIISVPDMLKYTVNIAVATDDKLPDKICSECKKQIITFYTFKQKTKRTEKSLFSMFKPMVQLPKQEKKQNTEAVHCTICDLIFSDDQAYNIHYGQNHPEILDAIEPSCNKLPDIETYTFEEGYANSNDSGTETKIDEIDMLTDVIESSPPRNKRTATRQLRTRAAKKRIVEIPSTSQAIHFKSESELEEAFDSTDENYIIAADEEQQEATEDDCLELYECPVCATQFVNKLDYLNHCKEHGGIEFQCDGCGSMFTEEEALLSHDCMGYDERLTEEDLFCVPCNKRLKSGTQLNQHNKMHDSMTMILAHTEFFSCHDCCLMFITKIDLTEHNAVNHPDKISKEMMDDDASDGITNVDESCTDYQFLDDDKQDFKDLPYSCGVCTESYSNIMELKNHVIFHATKYPCPIFECGCQYDQLSRLNIHVLNKHLNKQNMQCFHCGIPFQTYDELQAHLKNNCKEKKFKCYECDKKFFSKKALVTHLKTLREKKFKCKLCEKLFKQAGELKIHLRSHTNERPFECTICGNKYKTSSMRAAHMDSHINGKTFECTMCDKKLQSRTSYRNHMKRHTDEKRFECSYCSKKFFTNYHLKLHQSKIHKNLINEDVNAVLEEGVDESNDMIVYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -