Mdes002342.1
Basic Information
- Insect
- Mayetiola destructor
- Gene Symbol
- -
- Assembly
- None
- Location
- GL501493.1:2192410-2195345[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.3 3.6e+02 2.2 4.3 1 23 196 218 196 218 0.92 2 17 0.019 1.6 9.6 1.4 1 23 224 247 224 247 0.98 3 17 0.0026 0.21 12.4 3.5 1 23 252 274 252 274 0.98 4 17 0.00016 0.013 16.2 1.4 1 23 305 327 305 327 0.98 5 17 0.006 0.5 11.2 2.7 1 23 333 356 333 356 0.98 6 17 0.57 48 5.0 0.2 6 21 365 380 361 384 0.90 7 17 0.076 6.4 7.8 2.0 1 23 418 442 418 442 0.96 8 17 0.0036 0.3 11.9 2.9 1 23 448 471 448 471 0.97 9 17 0.00014 0.012 16.4 3.9 1 23 526 548 526 548 0.98 10 17 0.0031 0.26 12.1 1.6 1 23 585 608 585 608 0.90 11 17 0.00014 0.011 16.4 1.5 1 23 615 638 615 638 0.97 12 17 0.002 0.17 12.7 0.8 3 20 648 665 646 668 0.90 13 17 0.00011 0.0091 16.7 1.0 2 23 675 696 674 696 0.96 14 17 0.00039 0.033 15.0 0.1 5 23 713 731 702 731 0.81 15 17 0.0052 0.44 11.4 2.9 1 23 739 761 739 761 0.98 16 17 1.7e-06 0.00014 22.4 1.4 1 23 767 789 767 789 0.99 17 17 0.0028 0.23 12.3 2.2 1 23 795 817 795 817 0.95
Sequence Information
- Coding Sequence
- ATGGATGAAAGTAATTCCATTCGGAATTATTGTCGAATTTGTGCAACAAATCCACCCGATGTTCGGAATATTTTCGAAGTGGTTTACAAAGAAAAATTGCTTTCGGATATATTGGGACAGTGTTTGCAATGCACAATATTCCGAACCGAATATTTACCCGAATACATTTGTTCGCAATGCTGTGCAGATTTGATTCAAATGTGCGAATTCATTGAAACCTATGAAAAAAGTGAAAAATGGTTCATTTCGCGTTATAATGCAATCAATGAGGCTAGAACAATCAAAATCGAAACCGAGTGTCCCATAGAATTGGAACGAATCCCGGAAATTTTGGTCGCACCGAAAATTCGAGTATTTGCCGAGAGTCTTCAAAATTCATCACCGTATGCATTGGAATTAAAACAAGAATTTGATTGCGATTATGAATTTGAAGGGGCTGAATTGCCAGCCAGTCCGAATGGATCCAGTTCCGAGACGCAAGAACTGAACGAAGCAAATTGTTATGAATCAGGTGGTAACAACGAAAACACTATAAGCAGAGTGGATATTCATAAAACGATTCGTCGCGAGAAAGAAACTGGGCAATATCAATGTTCCATATGCGCTAAACAATTTTTGTGTTTGCATAATTTAAGAGTGCATAAAAATTTGCATACTGGAAGGAAAATGTTCAAATGTTACTTTTGTGACCTTCAAGTGAAAAGAAGCGATTATAGAGTAAATCACATCCGTAGAGCCCATCCCGAAGTCGTCTTTGAATGCTGGCTGTGCCGAAATAAATTCAACACATATTATGATCTTTGTAATCATATGCTTTCCCATAGTAGTTTACCTGAAAATGAATCGAATGCGGTAGCAAGCGTGCCCGTGAAAAAAAAGAGAATTCGCAAAAAACCGGATCCACAACAACAGTATCAATGCAGCATCTGTTTACGGGAATTTACAAATGTGGACAATTTTAAAAGTCACTACAATTTGCATACTAAAGCAAAAATTTACAAGTGCCAATTTTGCGACAGTGAATTCTATCGATCTGATTACCGTCTCAACCATATACGCAAAATGCATCCCGAAGTCACATTTAAGTGTTCTTGCAATTTAGTATTTGATACACAAAATGAACTGGGCCAACATATGTTGGACCAGGGTCATAGTAATTTATCCCAAAATGTATCGAGTCCTGTGCTGCAAGTTTCTCGCAAAATGGAAATAACCAAAAACCCTAAAGAAGGAACCATCGAAACTGGACAGTATCAATGCAGCCAGCCTTCTTGTTCGAAACGATTCTTGAATTTGCACAATTTAAAAGTGCATGAAAATTTGCATACCGGCGAAAAACTTTTCAGCTGCTTTTTTTGTGAAACAACGTTCCGACGTTCTGATTATCGAGTGAAACACGTCCGCAAAGTGCATCCCGAAGTAGTGTTTGAATGCTATGTGTGCAAAGATAGATTTGATCAATATTTTACCTTATGTCAACATTTTACCTTATGTCACGAAGTTCATTACCAGAGAATAGATCGAGAAGTCGGAAAAAAAAGACATGAACGAAACATTCACGAAGCACCAAAGTCATATGAATGCTACCATTGCAAGATGGTTTTTAAGCTATATTTCGATTTAAACCGTCACATGAAAATCCATTCAACGAATGGCCGCATAATATTTAAGTGTGATTATCCATCGTGTACGAGCTTCTATTTGAAAGAACAACATTTTATCAGCCACAAACGGAAACATAATGCGAAAATTTTCGATTGTGAATATTGTAATGAATCATTCGAAAAACGATTCGATTTGCATTCACATGTTTATGAGGTGCATTACGCCAATTTGAAGCAACATCAATGCGATCAATGCCCACGATATTTCCCATTGAAGTCGACATTGAAGGCACATATTTTGAAAACACATACAAAAGAAAAGCAAGAAAATCATCTTTGTACAGAATGTGGAAAAACATTTACAGCCCAGAGTATCTTAAAAAAACATTTGCCAGTTCATAGTGACGAAAGACCGATAAGCTGCACTCAGTGCCCATCTAAATTTAGATACAAGAAACAATTGAAAGTTCACATGCTAGTTCATACATCCGAACAAAATTATATCTGTAAAGTAGTGGTCGATGGTGGGCAAATTTGCGGCCGAAAATTTAGATATCCTTCCAGCCTAGATTTACATCGAAAAAGACATAGCAATTTACATCGAAAAAGTTTTCAGTGTTCCAGCTGCCCTTCCAAATTTTTCAGCAACCAAAAACTGCAGGTGCATACACGCAAACACACGGGTGAACGTCCCTATAAATGTGACTACTGTTTTCGTGCTTTTACTCAAAAGGGTGATATGACAAAACACATGCTAATCCATTTGGGTCCAACGCCACATAAATGTGACAACTGTGGAGAGTCATTTCGACTTGGAACCGAACTCCGAAAACATTCCTACTCACATTTCAAGCCACCTGAAAATTAA
- Protein Sequence
- MDESNSIRNYCRICATNPPDVRNIFEVVYKEKLLSDILGQCLQCTIFRTEYLPEYICSQCCADLIQMCEFIETYEKSEKWFISRYNAINEARTIKIETECPIELERIPEILVAPKIRVFAESLQNSSPYALELKQEFDCDYEFEGAELPASPNGSSSETQELNEANCYESGGNNENTISRVDIHKTIRREKETGQYQCSICAKQFLCLHNLRVHKNLHTGRKMFKCYFCDLQVKRSDYRVNHIRRAHPEVVFECWLCRNKFNTYYDLCNHMLSHSSLPENESNAVASVPVKKKRIRKKPDPQQQYQCSICLREFTNVDNFKSHYNLHTKAKIYKCQFCDSEFYRSDYRLNHIRKMHPEVTFKCSCNLVFDTQNELGQHMLDQGHSNLSQNVSSPVLQVSRKMEITKNPKEGTIETGQYQCSQPSCSKRFLNLHNLKVHENLHTGEKLFSCFFCETTFRRSDYRVKHVRKVHPEVVFECYVCKDRFDQYFTLCQHFTLCHEVHYQRIDREVGKKRHERNIHEAPKSYECYHCKMVFKLYFDLNRHMKIHSTNGRIIFKCDYPSCTSFYLKEQHFISHKRKHNAKIFDCEYCNESFEKRFDLHSHVYEVHYANLKQHQCDQCPRYFPLKSTLKAHILKTHTKEKQENHLCTECGKTFTAQSILKKHLPVHSDERPISCTQCPSKFRYKKQLKVHMLVHTSEQNYICKVVVDGGQICGRKFRYPSSLDLHRKRHSNLHRKSFQCSSCPSKFFSNQKLQVHTRKHTGERPYKCDYCFRAFTQKGDMTKHMLIHLGPTPHKCDNCGESFRLGTELRKHSYSHFKPPEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -