Mdes005502.1
Basic Information
- Insect
- Mayetiola destructor
- Gene Symbol
- -
- Assembly
- None
- Location
- GL501519.1:1441363-1446073[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.3 1.1e+02 3.9 0.3 2 23 6 27 5 27 0.93 2 14 0.098 8.2 7.4 0.1 1 20 943 962 943 964 0.93 3 14 0.012 1 10.3 0.3 1 23 1068 1090 1068 1090 0.98 4 14 2.2e-05 0.0019 18.9 1.2 2 23 1093 1114 1093 1114 0.97 5 14 0.0008 0.067 14.0 2.8 1 23 1120 1142 1120 1142 0.98 6 14 0.0026 0.22 12.4 5.3 2 23 1149 1170 1148 1171 0.94 7 14 2 1.7e+02 3.3 0.7 6 23 1185 1202 1183 1202 0.97 8 14 0.0028 0.24 12.3 4.9 3 23 1209 1230 1207 1230 0.95 9 14 0.0039 0.33 11.8 0.8 2 23 1243 1263 1242 1263 0.95 10 14 8.6e-05 0.0072 17.0 0.7 1 20 1270 1289 1270 1292 0.94 11 14 3.6e-06 0.0003 21.4 1.0 1 23 1300 1322 1300 1322 0.99 12 14 0.00015 0.012 16.3 5.3 1 23 1328 1350 1328 1350 0.98 13 14 1.1e-05 0.00096 19.8 3.0 1 23 1356 1378 1356 1378 0.98 14 14 0.0029 0.24 12.2 5.1 1 23 1384 1406 1384 1407 0.96
Sequence Information
- Coding Sequence
- ATGGATTCACAAATACAATGTCCGGTGTGTACACTTTACTTGCATGTTGGCATGAATTTACAAGATCATCTGAATACACATCCAAAAGAGCAAGTTATTTCGGCCTTAGTGAATATGACATTGCTGCAGCAACGAGCCAACGATGAAAATTCGAATAATTTTGAATGCAGCCGATATGAACCATTGGCAGAAGATCTCTATCCAGATAAACCAATTCCAAATGTTTCGGCCACATTTCAAAATCAACAACAATCAATTACATATTTTGCTCCGATATCGTCACAGCAAACGTCACACAAGGTTATGATTGTAAATGGTACGCAAGTATTTCATGATCGCAGCGGAAATAAAACAAATCCACGACAAATTGTCGCAAAATCATTACCACCATTATCGATACCAGCGCGCACATTTCGTTTGATTCCAGCCAAAAATTATGATGGTAAAATACCACAGGCTATTAAACCACCGCCACCATATCATGCATCAATTCAGGATAGTTTAACGGTACGAAATGCAATTCAACGAAATGAAATCAATCAAATTACAACACAAATTCAACAAAGTTGTTCAACAAATGTGTTCAATGTAACGACACAGGCTACGAGTAGTAGCACATTAACATCAGATATTGATACGGTTACTGGTACAGCCGGTATAAATGCAACTTGTGTGCAAAACAATGAATCGATAACAAATGATGAGAATCATAATAATGATGATCCAAATGAGAGTGTAGATTCGACAATGGAATTGCAAACAACTGCCGAACATTTAATCAACGATGATCATGAAATGAGTGATATGAGTATTGAGCCAACACCAGTTACATCGAATGAAATTCCATCAAAAGCAGCCACAACTCTTGGAAATGAAAGAATCGATTCAGATCAAAATGGTTCAAATACAGTGGAAAATACACCCGACAAACGAACAAAGTGTGGTCTCAAAGTGTTGAGTAATGTACAAGTTACGCCAAATACAATACTCAATGTATCATCGATAAGTTCACAAAATGATAATGAAACAGTCCCAGTAAATAATATGATTATTGTTGGATCGATTCCGTCGATGTCTACAGCCGGTTTGTCAACGAATACAAAATCATCGTCATCACAATCACCTCTACCATCGGTTAAATCGCCACAATCACTGTTAAAAAGTTCAAGTGAACCGTACAAATGTAGTATGTCTAAGACATCCCCAGAGGCCTCCAAAGGAAAAACTAAAACACCATCATCGATCAGTCAGGAAGACAGCCATCAATGTCATGAAACAATGGATGAAGAACTGCCTTTGCCTGCATCTCTGAATCCGAATTTGAATATGAGTTCGGCCGCCGAGCAACCGACAGCTTCCGATGAATGTTTTGTGAAACCATGCTCAAGCAAAGCGACGAGCGTTATCCGACTGGCCACACAAAAATTAATCAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATAATGATGTACGATCTCCAGCCAAATTTCCATACAATCGACAAGTGAAAAAGTTGGTTGTTAAACTGAAAAAACCATTCGTACCGGTAATTGAAGAAGAAGCCAATCTTCATCCGCCAGAAACATCTGAGGATTGCGTGGAAATTGTTAAAAAAGAGCCAACAATTGATGAATCCAATCGAAATAATGTGAACATTTTAATCGATGATATCGATCATCAAAATGGTGATGATGTAGCTATATTGGAATGTTCGGAAGATGTACCGTTCAGTCCACTTCGGCAGTCATATACACCGCTTCCAGTAAATAATTTGCTACAATGTCAAGTGGAGCACACAGAAAAACAAGTAGATCATGAACCACACAATAGAAATATATCAATTGAAACTAAGTCTGAAGAAACAATACACATTGTTGATGTGCGAAGTATATTAGATCGACCGTCAACCTCAATAAGTGATGAAGACGAGGAACGCGCAACAGTCAGTGCATCTGAAACAAAATGTGCTGAAAAGCGATTGAAACAGGAAACAAAATCTTCCAAATATAATAATGAATTGGTTATTTTTCAAATAAATTCTACCGAAGAAATTGAAGAATATGAGACGATCGAAGAGACTGCAACTGTTAGCAATAAATTAAATAATTCGGAATATAATGTTTGTTCATCATCATCGTCGATGGCAACATCATCTTCATCACTTTCAAACCAGGAGCCATCATCATCATTACAAAATGATTTTCAGAATGTGGCCGGAACGAGTCGAATGGAATATCCATTTATAAATGAATATAATGAGCAACAAGATAGAGATTTTTTCAATTCGGGCGTTCGTGTTCGATTGACACCGACACCATTTGTAGGCAATAATAATGCATGGAATCAACGATTCAGTACATCATTTGAATCAGAAACTGATAAGCAATCGTCATATCTATTCATGGATGGATGCAAAATGAATTCGGCAAGTGCCCGTGCAATGTCAAATGATAGCCTAAACATTCGAACCGATGAAAAAATGCCGGCTAAGGGTGAAATTTCCGAACAAGAAAGCAATGGTGACATCGAAGGTTCTTGGAGCCATCAGATTTATCCGGTGACCGAAAACGACAATATACCCAGGTATACAAATTCATATGATACAACGGTTGCACGGGAAAGCTGGAGCTTAAGTAATGAACAAAATTTGTCACGTGAAATGGAAAATATGTCAACAATACTTATGAAATTTTCTCCCATGGAGGAAGCCGATCAAAATGTGGATGTTAAACCAATCACTGAAAATATCTTACAAAACACCAAAATGGTTGCGAAAAAAGAGAAATCATTTGTCAAAGCTCGAAAATATCGTTGCCCAGTTTGTTCACAAATATTTGGCACATTAAAAGAGAAACGGTCCCATTTAATTGAGAGTAATGAGTGTCAACAGGGCGTATCATCATTTACAACAAAGCTTTTGCCAAAAGTATCAAAATTAATCAAGATTCGAAAACCCACCGAAACAATAACGAGTGCCAGTTGTTCAACATTAAATTCATTGGAAACACCATTAATCGAATGTAAAAGAGAGCAATTGGAAACGGCCACAGTCAAACCATTTACAAGCCTAAACAATTATCTACTTAGCTATAATTGGTCAACGTTAAGAGCAAAACCGTTGGAAGGAACAACAAAAGATGAAAATAAAACACTTTATGCAATCCTTGATAGTGGCGTAAATTATATATGCAAAATATGTGAAGAGCAATTCAATAGCATTCGTGCATATGATTTGCACATGACAACACATCCGGCTGAATGTTATACATGTGGTCGAACATTTAAACGATGGGTCAATTTTAGTATTCATTTGAAACGGCATTTGAATATTCGAGAGCATCGTTGTGCTCATTGCCCAAAACGTTTTGTATTACGTCAAAGTATGATCGAACATATGCGAATTCATAGCAATGAAGCTCCACTTAAATGTAGTTTATGTATGAAACGTTTTAAACGTTTTTCAAATTTGATACAGCATCGTAATCGTCATCATTTAAAATTACGACCACAAGCCAAAGATTTTATATGTTCATGTGGTGAAGTGTTTCATTCACGGGCAAAAATTGCATGGCATCGTGAAACGCACGATATTAAACCAAAATGTTGTCCCTATTGTCGGGAACGTTTTATGCATAAAAATAGTTTGGTGCGACATATTCGTTTGTCGCATACGGAACGTTTTCATTTATTTAAACGGGATTCAGTTGAATGTCCATATTGCAAAAAGAAATATATTAAATCCAGTCTTAAAATGCATATGGAACAGCATAAAACAACCCGACAAGTTTATGAATGTACAATATGTAATAAATCGCTGACAACAAAATGGAATTTAAAACAACATAAATGGATTCATGCAAGCCGATCATCAAAACCATTTAAATGTAGCATGTGCACCAAAGCATTTATACGCGAAAGTGAATACATTTCTCATATGAATACACACAAATCAATTAAACCATATACATGCGATCATTGTGGATGCCAATTTGCAAGAAAATATAATTGGTTAAGGCATACACGTGAACATGAAACGACTAAAAAATTTCGCTGTGAAACGTGCGGCAAAGATTTTCATCGAGCCTATTATTTGAAGGAACATCAACGCATTCATACCGGCGAACGTCCGTTCGAATGCACAATCTGTGGCAAAACATCAACTACCAAGACTAATCACAATAAACACGTGAAAATCCACCATGCCAGAGAACCACTTACGGCTGAAGCTTAA
- Protein Sequence
- MDSQIQCPVCTLYLHVGMNLQDHLNTHPKEQVISALVNMTLLQQRANDENSNNFECSRYEPLAEDLYPDKPIPNVSATFQNQQQSITYFAPISSQQTSHKVMIVNGTQVFHDRSGNKTNPRQIVAKSLPPLSIPARTFRLIPAKNYDGKIPQAIKPPPPYHASIQDSLTVRNAIQRNEINQITTQIQQSCSTNVFNVTTQATSSSTLTSDIDTVTGTAGINATCVQNNESITNDENHNNDDPNESVDSTMELQTTAEHLINDDHEMSDMSIEPTPVTSNEIPSKAATTLGNERIDSDQNGSNTVENTPDKRTKCGLKVLSNVQVTPNTILNVSSISSQNDNETVPVNNMIIVGSIPSMSTAGLSTNTKSSSSQSPLPSVKSPQSLLKSSSEPYKCSMSKTSPEASKGKTKTPSSISQEDSHQCHETMDEELPLPASLNPNLNMSSAAEQPTASDECFVKPCSSKATSVIRLATQKLIKXXXXXXXXXXXXXXXDNDVRSPAKFPYNRQVKKLVVKLKKPFVPVIEEEANLHPPETSEDCVEIVKKEPTIDESNRNNVNILIDDIDHQNGDDVAILECSEDVPFSPLRQSYTPLPVNNLLQCQVEHTEKQVDHEPHNRNISIETKSEETIHIVDVRSILDRPSTSISDEDEERATVSASETKCAEKRLKQETKSSKYNNELVIFQINSTEEIEEYETIEETATVSNKLNNSEYNVCSSSSSMATSSSSLSNQEPSSSLQNDFQNVAGTSRMEYPFINEYNEQQDRDFFNSGVRVRLTPTPFVGNNNAWNQRFSTSFESETDKQSSYLFMDGCKMNSASARAMSNDSLNIRTDEKMPAKGEISEQESNGDIEGSWSHQIYPVTENDNIPRYTNSYDTTVARESWSLSNEQNLSREMENMSTILMKFSPMEEADQNVDVKPITENILQNTKMVAKKEKSFVKARKYRCPVCSQIFGTLKEKRSHLIESNECQQGVSSFTTKLLPKVSKLIKIRKPTETITSASCSTLNSLETPLIECKREQLETATVKPFTSLNNYLLSYNWSTLRAKPLEGTTKDENKTLYAILDSGVNYICKICEEQFNSIRAYDLHMTTHPAECYTCGRTFKRWVNFSIHLKRHLNIREHRCAHCPKRFVLRQSMIEHMRIHSNEAPLKCSLCMKRFKRFSNLIQHRNRHHLKLRPQAKDFICSCGEVFHSRAKIAWHRETHDIKPKCCPYCRERFMHKNSLVRHIRLSHTERFHLFKRDSVECPYCKKKYIKSSLKMHMEQHKTTRQVYECTICNKSLTTKWNLKQHKWIHASRSSKPFKCSMCTKAFIRESEYISHMNTHKSIKPYTCDHCGCQFARKYNWLRHTREHETTKKFRCETCGKDFHRAYYLKEHQRIHTGERPFECTICGKTSTTKTNHNKHVKIHHAREPLTAEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -