Mdes018643.1
Basic Information
- Insect
- Mayetiola destructor
- Gene Symbol
- -
- Assembly
- None
- Location
- GL501520.1:1355177-1360378[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.31 26 5.8 0.2 3 23 229 250 227 250 0.90 2 24 0.21 17 6.4 5.0 1 23 283 305 283 305 0.96 3 24 0.00011 0.009 16.7 0.1 1 23 313 336 313 336 0.97 4 24 0.071 6 7.9 1.2 1 23 342 365 342 365 0.95 5 24 2.3 2e+02 3.1 0.1 6 23 394 412 388 412 0.91 6 24 1.5e-05 0.0012 19.4 3.8 1 23 445 467 445 467 0.99 7 24 1.7e-05 0.0014 19.2 1.4 1 23 484 507 484 507 0.96 8 24 1.2 1e+02 4.0 0.1 2 23 527 549 526 549 0.90 9 24 6.2 5.2e+02 1.7 0.1 6 23 559 576 559 576 0.96 10 24 0.042 3.5 8.6 1.3 1 22 582 603 582 605 0.90 11 24 8.6e-06 0.00072 20.2 1.2 1 23 611 634 611 634 0.97 12 24 0.00039 0.033 15.0 1.1 2 23 640 662 639 662 0.95 13 24 1.2 1e+02 4.0 0.3 2 23 697 719 696 719 0.93 14 24 0.0073 0.61 11.0 0.8 1 23 782 805 782 805 0.97 15 24 0.058 4.8 8.1 0.5 2 23 852 876 851 876 0.93 16 24 6.2 5.2e+02 1.8 0.0 6 23 886 903 886 903 0.95 17 24 0.0056 0.47 11.3 0.7 1 23 909 931 909 931 0.97 18 24 0.0043 0.36 11.7 1.4 1 23 935 958 935 958 0.98 19 24 0.00039 0.033 15.0 0.6 1 23 967 990 967 990 0.95 20 24 0.0036 0.3 11.9 0.4 1 23 999 1022 999 1022 0.96 21 24 0.5 42 5.2 0.7 1 23 1033 1055 1033 1055 0.98 22 24 0.0062 0.52 11.2 0.1 1 23 1060 1083 1060 1083 0.96 23 24 2.7e-05 0.0023 18.6 0.6 1 23 1088 1110 1088 1110 0.99 24 24 0.024 2 9.4 1.9 1 23 1116 1139 1116 1139 0.98
Sequence Information
- Coding Sequence
- ATGGAAATCATAACTCGTGATGTTAGTTGTCGTTTGTGTTTTTGTTCGAACGGCAGCTTTTTAAATATTTTCGATGATACACCGTTTGCTTTGGATATTGCCGACATGTTGAAGAAATATTTTCACGATGAAGCCAAAATTTTGGACCCATTACCAAATATCATTTGCAGTGATTGTTGGCGCAAGACGGAATCATTTCATGAATTTTATGAGAAAGTATTGAGCGATCGTGAAAATTATTTGGCAAATTATAAGATGTCGATCAAGGAAGAACAGGACTCAGTCTTGATTCGGCAAAACCAATTTGATGAATTTAGTGAAAATATAAGCGTTGAACCAATCACAGTGGCACCAATTCAAATCGATGACAATGAACACGAACCATTGGTTTTAGATTGTTCACTGAAAGAAGATGATGAACTATCTGCCATAGATAATGATGAATCCAATTTAGATTATGATTGTGTTACAAAGACTGATTATCAATTCGAAACAAATTCTTGGTCAGGAGAAAATTATATTCAAGAAGATTTTGATGAAAATTCGAACGATGATTACTTTGAAGACAACAATGACAGCAGTGACGAGCAACCAGAGCAAGCAAATTCTTCGCTACCAACAAATATAAAGCAATTGAGCACATCCCAAATTCAGGCAGTAGTCACCGAATACTTTGACATGAATTGTGATGAATGTGAGACTACATTTTCGGGTTTTGCTGAGGCAAAAAGCCACTATCAATTTGCTCATAACATTGCCAGAGGTTATGTTAAATGTTGTGATTTAAAACTAAAAGAGCACAAACATTATCGTGGTCATATATTGTGGCATCTAAATCCAAATGTATTTGATTGCTCGATTTGTGGTTCAACTTACAAATCATTGCAAAGCTATCATGCCCATAAACACAAACATAAAATAAGGGCACTGAAAAAATTTATCTGCGATATTTGCAATGCTGAATTTGCTGACAAATCAAAACTGATATATCACATTATGCGAGTTCATGCGGCAAAAAAAAAGTATTTCTGTGAGGAGTGTCGCAACAGTTTCCAAACTGAAAGCCAATTCGATGTGCATAGTCGGTATGTGCATTCGGGCCTCGATACACAGTTAACACCTGAACGCATCGAAGAGTTTATACGCACCAAATTTGATATGGAATGCGAACTAAAACCATGTAAAAAAGTCTTTGAATCATTGCAAGATGCAAAACAACATTACTTAAATGTTCACAATGTTTCGAATGGATGGATCAAGTGCTGTAATAACAAATTAAAATTCAAACAGGAAACAAATGATCATATCGAATGGCATATTAATCCAACAATATTTCAATGTTCTGAATGTGGAAAATTGTGCGACAATCGGAAAAATTTGAATAAGCATATGACGACACACGGAGACAAAAATTATTTCCGCCGGACACATCATGAGTTTGAAGACCAATTCGAATGCGAATACTGTAATAAAACTTTTTCAAAAAAAATCAAGTTGATTGAACACCTGAAATATATTCATGATCCAGAAATCCAAAAAGTGAAGGAAGCCGAGTTATTGGTACGCTTTTTCGATATGACATGTGATAGATGCGATAATGTCTTTGACTCACTCGAAGAAGCTTTAACTCATTACATTCAAGAGCATAATGATCAGAATGGTTACATCAAATGCTGTAATTTGCAATTTAGTGAAATGTCTTTAGTCAAAGATCACATAAAATGGCATTTGGATCCAAATGTATTCAAATGTTTTAAATGCAACGAGAAACTGCCAACCCGAAAAGCTTTAAAATCACATAATTTGGCTACTCATTCGCGTGGTTCTTTGTTCATCTGCGATATTTGTCAAAAAAGTTACACATTAAAGGACAAATTGAAAAGACACATACTAACGACACATTTAAACTATAAAATGCAGTGTGGTCTCTGTGGCGAAAAATTTGAAAATTTCAAGCATCTGCAAGCACACCTGGAATCGAAACATCTTGATGACTTAAACAGTATTGAAACTGATATCAAGAATATTCAACTTTTGGATCTAAACGATGAGCGAATGAAAGCAGTGATGAAAAATTTTGTCGATCAAACGTGCGATATTTGTCATATAAAGTTGGATACGTTGGCTGAAGCAAAAATTCATTATATGAATGAACACAAAAAACGAAAAGGTTATTTTAAATGTTGTAAAGCTAAGCTCCCTTTTGAGGCAAATCTTATTGATCATCTTAATTGGCATGTGAATCCGAATATATTCAGATGTCGTTTATGCTGTAAGGTACAAGGATCGCGACATTCAATAGTAGGCCATGTGAAAGCTCACCAAGCATTATACAACAAAAAATTCAATTGTTCAAAATGTTCAGAAATTTTCCCAAGAATTGAGAGATTTAGAATTCATATGGAAACAAAGCACGGTGTCAAGGTACCGAAGCGACGGCTCTTTCGGGATGAATCTCCACCGAAATCATTTGCTGATGCAAACGATGATGACGAAGACGATGAAGAGGACGATCCAAATTGGGATGTCGATAATACGAAACTTTTTGATATGACATGCAATGTAAATGACTGTACAGCTGTATTTTCGTCGTTTACAAATGCGAGAAGACATTATACAAAAGCCCATAATAATCCAAATGGTTTCGTCAAATGCTGTGATATAAAATTACGGACTTCATACGATGTCAGGGATCATATTGCGTGGCACAAGAATCCAGGATGTTTCAAATGTGAATCATGTGGACGGGATTATAAAATCAAACGAATGCTGTTAAGACATGCTGAAAGTCATAAAAAAAAGTACCAATGTGATCGTTGCGATGATAAAAAATACACCAGAAAAACAACCTTGGATAATCATATGCTTTGGCACGAAAACAGAGAAAAGAAACTTAAATTTAGTTGTGCGGATTGCAACAGAAGTTATTATAGTGAAACTTCATTAAAAGCGCATCGCGATCGTGCTCACACTATCACCGAAAAAAGCAACTCTTTTATATGTGAATTTTGTGCACGCAGCTATCGAACAGAAGGTTTGCTGAAAGGCCATTTGAGAAACACTCATAAGCAAGGACCACAAAAACCAAAACAAAGGTTCAGATGTGACATTTGTTTGAATTTTTATGCCAGTAAAGGTATTCTTCGGACACATAAGCTAACGCACGCACAAAAACTTTTCAAATGTAATTTGTGCCGAAAAATGTCCCCAACGGCCAATGCACTAGATTTGCATATGAAAGCAGTTCATGTTGAAGCAAAATATAGATGCCATTTATGCGAAAAATCATTCAAGTTGGCACCAGCGCTGAAGGATCATATCGCAACACATCTGAATGACAAACAATATAAATGCACATACTGCGAGGAAGAGTTTATATGGCGTACAAATATGTATAAACATCGAAAACGAATCCATAAAAAGGAATGGGAGGCCGACAAAGCTAAAAAAGAAGCAGAAAAGAAAATGCTATAG
- Protein Sequence
- MEIITRDVSCRLCFCSNGSFLNIFDDTPFALDIADMLKKYFHDEAKILDPLPNIICSDCWRKTESFHEFYEKVLSDRENYLANYKMSIKEEQDSVLIRQNQFDEFSENISVEPITVAPIQIDDNEHEPLVLDCSLKEDDELSAIDNDESNLDYDCVTKTDYQFETNSWSGENYIQEDFDENSNDDYFEDNNDSSDEQPEQANSSLPTNIKQLSTSQIQAVVTEYFDMNCDECETTFSGFAEAKSHYQFAHNIARGYVKCCDLKLKEHKHYRGHILWHLNPNVFDCSICGSTYKSLQSYHAHKHKHKIRALKKFICDICNAEFADKSKLIYHIMRVHAAKKKYFCEECRNSFQTESQFDVHSRYVHSGLDTQLTPERIEEFIRTKFDMECELKPCKKVFESLQDAKQHYLNVHNVSNGWIKCCNNKLKFKQETNDHIEWHINPTIFQCSECGKLCDNRKNLNKHMTTHGDKNYFRRTHHEFEDQFECEYCNKTFSKKIKLIEHLKYIHDPEIQKVKEAELLVRFFDMTCDRCDNVFDSLEEALTHYIQEHNDQNGYIKCCNLQFSEMSLVKDHIKWHLDPNVFKCFKCNEKLPTRKALKSHNLATHSRGSLFICDICQKSYTLKDKLKRHILTTHLNYKMQCGLCGEKFENFKHLQAHLESKHLDDLNSIETDIKNIQLLDLNDERMKAVMKNFVDQTCDICHIKLDTLAEAKIHYMNEHKKRKGYFKCCKAKLPFEANLIDHLNWHVNPNIFRCRLCCKVQGSRHSIVGHVKAHQALYNKKFNCSKCSEIFPRIERFRIHMETKHGVKVPKRRLFRDESPPKSFADANDDDEDDEEDDPNWDVDNTKLFDMTCNVNDCTAVFSSFTNARRHYTKAHNNPNGFVKCCDIKLRTSYDVRDHIAWHKNPGCFKCESCGRDYKIKRMLLRHAESHKKKYQCDRCDDKKYTRKTTLDNHMLWHENREKKLKFSCADCNRSYYSETSLKAHRDRAHTITEKSNSFICEFCARSYRTEGLLKGHLRNTHKQGPQKPKQRFRCDICLNFYASKGILRTHKLTHAQKLFKCNLCRKMSPTANALDLHMKAVHVEAKYRCHLCEKSFKLAPALKDHIATHLNDKQYKCTYCEEEFIWRTNMYKHRKRIHKKEWEADKAKKEAEKKML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -