Basic Information

Insect: Mayetiola destructor
Gene Symbol: -
Assembly: None
Location: GL501434.1:446726-449472[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.001 0.085 13.7 1.4 1 23 329 351 329 351 0.97

2 12 0.03 2.5 9.0 1.5 1 23 355 377 355 377 0.98

3 12 0.00049 0.041 14.7 0.6 3 23 386 406 384 406 0.97

4 12 3.8e-07 3.2e-05 24.5 2.4 1 23 412 434 412 434 0.99

5 12 3e-07 2.5e-05 24.8 1.6 1 23 441 463 441 463 0.99

6 12 3.5e-05 0.0029 18.3 0.7 1 23 469 491 469 491 0.97

7 12 8e-05 0.0067 17.1 0.3 1 23 497 519 497 519 0.98

8 12 2.3e-05 0.0019 18.9 0.7 1 23 525 548 525 548 0.96

9 12 1.2e-05 0.001 19.7 2.6 1 23 554 577 554 577 0.97

10 12 6.3e-06 0.00053 20.6 3.3 1 23 583 605 583 605 0.99

11 12 4.4e-05 0.0037 17.9 0.6 1 23 611 633 611 633 0.96

12 12 0.0014 0.12 13.2 0.7 1 22 639 660 639 663 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.001	0.085	13.7	1.4	1	23	329	351	329	351	0.97
2	12	0.03	2.5	9.0	1.5	1	23	355	377	355	377	0.98
3	12	0.00049	0.041	14.7	0.6	3	23	386	406	384	406	0.97
4	12	3.8e-07	3.2e-05	24.5	2.4	1	23	412	434	412	434	0.99
5	12	3e-07	2.5e-05	24.8	1.6	1	23	441	463	441	463	0.99
6	12	3.5e-05	0.0029	18.3	0.7	1	23	469	491	469	491	0.97
7	12	8e-05	0.0067	17.1	0.3	1	23	497	519	497	519	0.98
8	12	2.3e-05	0.0019	18.9	0.7	1	23	525	548	525	548	0.96
9	12	1.2e-05	0.001	19.7	2.6	1	23	554	577	554	577	0.97
10	12	6.3e-06	0.00053	20.6	3.3	1	23	583	605	583	605	0.99
11	12	4.4e-05	0.0037	17.9	0.6	1	23	611	633	611	633	0.96
12	12	0.0014	0.12	13.2	0.7	1	22	639	660	639	663	0.91

Sequence Information

Coding Sequence: ATGAGCCGATTAAAAAAGTGTTTTGTTTGTAATGCGGCCCTGCAAGTCAGTCAAATTCGAACGGTTGATGGTCTATTTTTTGCTCCACCAAAAATATCAAATCATCCACCAACCGAATCGCTTGCAACGATTTTAAGTGATATTTTGGATAGAGATATTCTTATATCGGATACACATTCCGATGTTTTGTGTAAAAAGTGTCAACAAAATTGTGTCGAATATGATCGTTTATCAAAACGATTGGAAATACTTCGGCAAACCATATCGGATAATTATCAAGAAACAAAAGAAAAATTGGAAATGGAAGAAGCCATCGAAATTGATTCGGGCAATAGTTTGGTGGAGCATAGTGATTTATCGAATATGTATGCAATTGAAACGGTCGATCAAAATATGGGCGAAGTGTTCGATAATTCACAATCGAACGATTCAAATGAAACCGAAACGACGAAAAAAGTTATTCTCATCAAATCCGAAAATGATTTTCGATCGTATTTTACCGTTGCGGAAATTGATGAAAGTGGTGATGCGACAGCCCGTTCAGATAGTACGGCAACTATTAATTATGATTTAGATGAAGATATAACACAACAATATGTGTGTGCCGGTCCATCGAATGATGCGAAGGCGGGAAAATTCTTAGCAAATTGTAATCAAATGATTGAAATTGAATCAAGTGACGATTTTCCGGAATCCGATCAATATCTTGTGTTTCATGAAACAAATGATCCATTAAATGATAATATTGGAGATGTTGAAGGTGTTGTGAGCGATCCGGGTGCCGTTATTTTACAAGAAGACACGACAAAAAAACGAATGCCAGCTAAAAAGGCCAAATTTGATGATGAAGGAGACGAACAACGACAGTTATTCGTTCGAAATGGTTTACAATATCAATGCATTTTGTGTGAGCCCGCCACTGAAGTGATTTACGATACAAAAACAATTACGATTCATTTAAAAACCGATCACAATGAAAAAATTTATGTTTGTGATATTTGTGGTTGTGATTTTCGTAAACGAACACTATACAATGAACATGTTAATGAACATTCGACTTTGCATGAATGTGAAGTGTGTAAGGCCATTTTTACTGAGGTTCGAGACTATCGATTGCACAAGAAAACTCATTCGTCAAATGAGAAAATTTGGGCATGCAAATTATGCGAAAAGAAATATAATTCCCGGAAATTATTGGATGAACACATGAATATGCATACTGGAGAACGCCCATACAAATGTCCGCACTGTGTCAAAGATTTTGCATCAAAATACACATTAACCGCACACATGAAGACGCACAACGAACGTCAACGGCCGTATGAATGTGACGATTGCGGAAAAGCGTTTTACAGTCATCAAAATTTAACACAGCATGCCCGCACTCACACAGGCGTCAAAGAGTACGAATGCAATATATGTCAGAAAAAATTCGGTTCGCCGCATAATTTAGATGTTCATAAAATCGTTCATACCGGCCACAAGCCATTCATTTGCCGAACTTGTGGTAAAGGTTTTGCCCGTCGTGCCGAAATCAGAGACCATGAACGAACTCACACGGGCGAACGGCCATACAAATGCGATTTATGTCCATCCACCTTTGCACAACGTTCCAATTTGATGTCACACAAACGTGCAACGCATTTCAATGATAAACGGTACAGTTGCGAAACATGCAATCGCTCATTCAAACGACGTCGGCTACTTGAATATCACATCAAATCAACACACACCGGAGAAAGGCCATTCAAGTGCAATCAGTGCAGTGCCACTTTTGTTTATCCCGAACATTTCAAAAAGCATATGCGAATCCATTCGGGTGTTAAACCGTTTGCATGTGAGGTGTGCGGAAAAAAATTCAACAGTCGAGATAACCGTAATGCTCATCGCTATGTTCACAGTGATAAAAAACCGTATGAATGTAGTGTGTGCCACACTGGTTTCATGCGTCGACCATTACTCTATGCACACATGGAATCACAACAACATTTGAACAACGAAATTATCGTAAACAAACCAAGGATAATTCTTCGAAAAGATGGATCCGGTTCGAATGCCGTCGGTGGCGGTGATGGTGGTGGTGATGATGAGATTGTTTATCTTAATCTGAATGATGAAGATTTGATAATGGACGACGATGATTATTCGGCATTGGAAGAGGAATATATTGTTGACGATAATGGTGATGCTGAGTCAGCTGAGTTGGCGACTGAAACGAACGAAGATTACAAAGACGAAACGATCGTGGAAGAGAGTGACATTGGGAGAGTTGAACTCGATTTAGACTCAATTATTCGAATAATTAAAAATTAA
Protein Sequence: MSRLKKCFVCNAALQVSQIRTVDGLFFAPPKISNHPPTESLATILSDILDRDILISDTHSDVLCKKCQQNCVEYDRLSKRLEILRQTISDNYQETKEKLEMEEAIEIDSGNSLVEHSDLSNMYAIETVDQNMGEVFDNSQSNDSNETETTKKVILIKSENDFRSYFTVAEIDESGDATARSDSTATINYDLDEDITQQYVCAGPSNDAKAGKFLANCNQMIEIESSDDFPESDQYLVFHETNDPLNDNIGDVEGVVSDPGAVILQEDTTKKRMPAKKAKFDDEGDEQRQLFVRNGLQYQCILCEPATEVIYDTKTITIHLKTDHNEKIYVCDICGCDFRKRTLYNEHVNEHSTLHECEVCKAIFTEVRDYRLHKKTHSSNEKIWACKLCEKKYNSRKLLDEHMNMHTGERPYKCPHCVKDFASKYTLTAHMKTHNERQRPYECDDCGKAFYSHQNLTQHARTHTGVKEYECNICQKKFGSPHNLDVHKIVHTGHKPFICRTCGKGFARRAEIRDHERTHTGERPYKCDLCPSTFAQRSNLMSHKRATHFNDKRYSCETCNRSFKRRRLLEYHIKSTHTGERPFKCNQCSATFVYPEHFKKHMRIHSGVKPFACEVCGKKFNSRDNRNAHRYVHSDKKPYECSVCHTGFMRRPLLYAHMESQQHLNNEIIVNKPRIILRKDGSGSNAVGGGDGGGDDEIVYLNLNDEDLIMDDDDYSALEEEYIVDDNGDAESAELATETNEDYKDETIVEESDIGRVELDLDSIIRIIKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -