Basic Information

Insect: Mayetiola destructor
Gene Symbol: -
Assembly: None
Location: GL502710.1:465783-467992[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.7e-05 0.0023 18.6 4.2 1 23 177 199 177 199 0.98

2 15 1.2e-07 9.9e-06 26.0 2.7 1 23 205 230 205 230 0.98

3 15 2e-05 0.0017 19.0 1.5 3 23 248 268 246 268 0.97

4 15 0.011 0.95 10.4 0.4 1 23 274 299 274 299 0.96

5 15 1.6e-05 0.0013 19.4 1.4 3 23 307 327 306 327 0.97

6 15 2.9e-07 2.4e-05 24.8 2.0 1 23 333 355 333 355 0.98

7 15 5.1e-07 4.2e-05 24.1 0.5 1 23 361 385 361 385 0.98

8 15 0.00016 0.013 16.2 1.5 1 23 391 413 391 413 0.98

9 15 3.8e-07 3.2e-05 24.4 0.6 1 23 419 441 419 441 0.98

10 15 1.2e-05 0.001 19.7 3.9 1 23 448 470 448 470 0.99

11 15 0.00066 0.055 14.3 0.4 1 23 476 501 476 501 0.96

12 15 0.22 18 6.3 2.7 2 23 517 538 516 538 0.95

13 15 2.1e-06 0.00018 22.1 1.4 1 23 544 566 544 566 0.98

14 15 1.5e-05 0.0012 19.4 1.7 1 23 572 594 572 594 0.98

15 15 0.014 1.2 10.0 3.0 1 23 600 622 600 622 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.7e-05	0.0023	18.6	4.2	1	23	177	199	177	199	0.98
2	15	1.2e-07	9.9e-06	26.0	2.7	1	23	205	230	205	230	0.98
3	15	2e-05	0.0017	19.0	1.5	3	23	248	268	246	268	0.97
4	15	0.011	0.95	10.4	0.4	1	23	274	299	274	299	0.96
5	15	1.6e-05	0.0013	19.4	1.4	3	23	307	327	306	327	0.97
6	15	2.9e-07	2.4e-05	24.8	2.0	1	23	333	355	333	355	0.98
7	15	5.1e-07	4.2e-05	24.1	0.5	1	23	361	385	361	385	0.98
8	15	0.00016	0.013	16.2	1.5	1	23	391	413	391	413	0.98
9	15	3.8e-07	3.2e-05	24.4	0.6	1	23	419	441	419	441	0.98
10	15	1.2e-05	0.001	19.7	3.9	1	23	448	470	448	470	0.99
11	15	0.00066	0.055	14.3	0.4	1	23	476	501	476	501	0.96
12	15	0.22	18	6.3	2.7	2	23	517	538	516	538	0.95
13	15	2.1e-06	0.00018	22.1	1.4	1	23	544	566	544	566	0.98
14	15	1.5e-05	0.0012	19.4	1.7	1	23	572	594	572	594	0.98
15	15	0.014	1.2	10.0	3.0	1	23	600	622	600	622	0.96

Sequence Information

Coding Sequence: ATGGAAAACGGCCCAGGAATAGAATTAGAGCCCGAAGTGGTCATTTGTCATAACAATGACGATGTGGAATTGGCATTTGATCCATTCGAAGATGCCGACATTGATTTCTCAGTTCGTGATTATGGTGAATGTGATGGAGTGGAGGAAATTGATTGCAATTTTGGAATATCAGACGTGAGAGAGCAAGTTCGAATTGTAAACATTAAAACAGGTGAAACTAGCGATACTTCGGAAAACGATTTTCCGGAAGCAAACGATTTTCACAACGACAGTTATAACAGTGATTATGATAATGATGATTACAAACCGTCAACTGTTATAGAAATAAAATCTGAGCCAGACGAAGTGAGCGAAGAGCCAAAAGCTACAGAAAAAATTGACTCATCAGACGTAGACGCTTCAGATGCTAAACTTGAATCTGAAGAGGAAAGTGATTGTAAATTAAAAAACGATGTTAGAGAAAGAGCAAAAAACGCGAATAAACTAAAAGCCAAAAGAAAAAAAGGGCGACCAAAATCTGAAATTTTACACAAGTGCAAAACATGTTCAAAGCAATTTCCTTATTCCAGCTCACTGCGAGTTCACGAACGAACACATTTGCCAAATAAAGGCTTTGAATGTCCCGAAATCGATTGTAAAAAATCTTTTTCTAGATCTGATCATTTAAAACATCACATAAACACTGTACACAAGGGTCAGGTTGTCGACGGAGTATTACGAGTTCCAACATTCGAGCAGAATTGCCCCGTATGCTTTCGGACTTTCTATCATGCAGGGAATTTGAGGACCCATTTAAAGATTCATGTAGGCGAAAGAAAATTCAAATGCGATATAGATAACTGTTCGAACACATTCGTCTTGGCTCAACATTTGAAATCGCATATTGAAATAGTCCATACGAAGTCGCGCCGGGAGATGTGCTCCATTTGTGGGAAAATATTTAATCATATCGGAAACTATAGAAAACATCTAAAAATCCACCAAGGAATCAAACCCTTCGAATGCAATATATGTCAGAAGAAATTCGGACAATCGTCAAATTATAAAAATCATATGAAGGTTCATTTGAATGATCGCCCATACAAATGTGATGTGCCCGATTGCAATCGCTCTTTTGTGCAGCCACACAATCTAATTCTTCATCAAAGAGTGCATTCTGGGGAGAAACCCTTTTCTTGTGAGGTTTGCTCTCGTGCCTTCCGTTTAAAGTCTCAACGTGATAGCCATATGAGAACACACACTGGGGAAAAACCATATACCTGCATGGATTGCGGAAAAGCATTCAGTTCAAGGAGTTTATTGCGAATTCATGAGAAATCCCATTCGGACAATGCTACAGAGTTCCAGTGCACCTATTGCCAGAAGACTTATGCTTTCAATCATCAACTGGTAGCTCACACTCGCACCCACACCGGAGAGAAACTGTACTCGTGTACAGTGTCAAATTGTGATGAATCATTTGCATCGGCTGCACAACGAAATCGACACATTAAAAATCGGCACGAAGATGCCAGTGCGACCGGAAAGAAAAACGAAATTAAAGATTTACCATGTGGTACATGCGGTCGCATCTTTCACTGCAAACGTCTATTAAGCAATCATGTTAAAATTCATGAAGGCATCAGAGAATTTAAATGTTCTTATTGCCCAAAGGCTTTTATAACAAAAAGCGACCAGAGGAAACATGAACGCGTCCACACTGGTGAAAAACCTTATAGTTGTTTGATTTGTGGTCGTCAGTTTACGTTTAGTAATAGCTATCGTATTCATATGCGTAATCATGCAGGCGAAAAACCATTTGATTGCGAATATTGCCCGAAAAGGTTTAGCTGTTCATCGGATCGCGGCAAACATGTTCGGTCACACGAAAGAAATGCTTCCAACCAGTAG
Protein Sequence: MENGPGIELEPEVVICHNNDDVELAFDPFEDADIDFSVRDYGECDGVEEIDCNFGISDVREQVRIVNIKTGETSDTSENDFPEANDFHNDSYNSDYDNDDYKPSTVIEIKSEPDEVSEEPKATEKIDSSDVDASDAKLESEEESDCKLKNDVRERAKNANKLKAKRKKGRPKSEILHKCKTCSKQFPYSSSLRVHERTHLPNKGFECPEIDCKKSFSRSDHLKHHINTVHKGQVVDGVLRVPTFEQNCPVCFRTFYHAGNLRTHLKIHVGERKFKCDIDNCSNTFVLAQHLKSHIEIVHTKSRREMCSICGKIFNHIGNYRKHLKIHQGIKPFECNICQKKFGQSSNYKNHMKVHLNDRPYKCDVPDCNRSFVQPHNLILHQRVHSGEKPFSCEVCSRAFRLKSQRDSHMRTHTGEKPYTCMDCGKAFSSRSLLRIHEKSHSDNATEFQCTYCQKTYAFNHQLVAHTRTHTGEKLYSCTVSNCDESFASAAQRNRHIKNRHEDASATGKKNEIKDLPCGTCGRIFHCKRLLSNHVKIHEGIREFKCSYCPKAFITKSDQRKHERVHTGEKPYSCLICGRQFTFSNSYRIHMRNHAGEKPFDCEYCPKRFSCSSDRGKHVRSHERNASNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -