Mdes016734.1
Basic Information
- Insect
- Mayetiola destructor
- Gene Symbol
- TIGD2
- Assembly
- None
- Location
- GL501492.1:968264-969028[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-08 5e-05 23.2 0.1 18 41 35 58 27 62 0.89
Sequence Information
- Coding Sequence
- ATGGCTGAAAACAAAGTGATAATAATCGACGAAAGCCGAAAAAATAATTTTCTTTCATTAAAAGACAAAGCAGAAATTTTAGAGCGATTAGATAATGGAGCGACAGCAAGTCATTTGGCCCGTGAATATGGCATATCAAAATCAACAATATCCCGTTTTAAAAAGCGAAAAACCCGAATCCAAGAAGCTGTAACCAACATTTATCCAAATAATACCGATCGTCGAACAATGCGTGGAACATTTCATCCAAAAATGGAACAAGCCCTTTACAAATGGTACATTAAGCTGTCCGAAAAAAATATTGATGTATCCGCATCAATGCTACGATATCAGGCTCAAGTTTTTTATCGAGAATTTCAAGAGAGTAATTATAGCTTTTCGGCGAGTACTGGTTGGCTAAAAAATTTCCAAAAACGTTTTGGCATTCGAAGTTTGACAGGCGATAAAGCAGTTGAGCTGCATGAACACAAATCAAAATCGGTTAAAGTTGAACAAGAATGTGAAACAATTGAATATTTAATCGAAACAACCGATGACTGTGATGAAGAAGAAGAAGAAGAAGAAGAAAATTTACCACAAATTATCAAAACGATCACACCAACTGGTAATAATAATTCAAATGGTGATGAAGATTGGGTTCAAGATGATGAAGCATATCGATGTTTAGAAACGGTTATCAAATGGTCAATGGAACGATCCGTTGATACACTTTATCTTACAATGTTAAGAAATCTCAAGGCAAAGGCTAAAAATTCGAAAAAATAG
- Protein Sequence
- MAENKVIIIDESRKNNFLSLKDKAEILERLDNGATASHLAREYGISKSTISRFKKRKTRIQEAVTNIYPNNTDRRTMRGTFHPKMEQALYKWYIKLSEKNIDVSASMLRYQAQVFYREFQESNYSFSASTGWLKNFQKRFGIRSLTGDKAVELHEHKSKSVKVEQECETIEYLIETTDDCDEEEEEEEENLPQIIKTITPTGNNNSNGDEDWVQDDEAYRCLETVIKWSMERSVDTLYLTMLRNLKAKAKNSKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -