Mdes021508.1
Basic Information
- Insect
- Mayetiola destructor
- Gene Symbol
- bab1
- Assembly
- None
- Location
- GL501533.1:47203-49491[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-17 7.4e-14 51.5 0.0 1 43 68 111 68 113 0.95 2 2 3.5 4.6e+03 -2.3 0.1 10 23 199 212 199 214 0.84
Sequence Information
- Coding Sequence
- ATGGAACAAACTTCCGTTTTGGGTCGAAAAGAAGCTAAGATATTGGAAAATTCACAGGGGTGGCCGGGCGTTCCAACGACAAATTCATTAGCGGAAAGTTATCAATACCAATTGCAATCAATGTGGCAAAAATGTTGGAATACAAATCAAAATTTGGTGCATCATTTACGATTTCGTGAACGTGGCCCATTAAAATCTTGGCGTCCCGAAACAATGGCCGAAGCAATATTCAGTGTACTAAAAGATGGTTTGTCATTATCGCAAGCAGCACGAAAATATGATATACCATATCCAACATTTGTATTATATGCAAATCGTGTACATAATATGTTGGGACCATCAATGGAATCCAGTTTAGATTTACGGCCAAAAGGTCGAGGCCGTCCACAACGTATATTGCTTGGCATTTGGCCCGATGATCATATTAAAGGTGTTATCAAAGCGGTCGTATTTCGTGATGCTAAAGATTTAAAAGATGATCCAAGTATACATTTAGCTGCTGCTGCAGCTGCGGCCGCTGCAGCTGCCGCTTATGGTGGCCATTCGCCGGTATATCCATTCCATGATGGTGCCATACCGGGCTTCCCATCATCGGCCGCATGTTCAAATGGTTTATTATCAGCGAATCAAAGTGCTGGCGAAACAATATCATCCGAGGCGGCCGTTGCAATGGCCGCTGTAATGGGTTTACGGCAACAACATCTTAATGCGTCAGCTATTAATCAACATCATTCCGATACGGATTTAACAAATTTTCGTTCAGCAACAGATAGCGGTGGTGTTGGATGCTTAAAACAACCAAAATTAGGATCACCAGCCACATCTAGTCAATCAAATAATAATGAAATAAATTTTCCAATGCCACGATTAGCATCACCGGCTATACCAAGTATACACAGTATTAGCGGTTTGTCCAGTTTACATTTAATGCAACAACATAATTTATCAACCGGTGATTTAATTGCGAATCGGTCACGAAATCAATGTAATGATGCACGTTCAACGCCACCACATACGGAAATATCGAAATTTACCGGCCATATTGATACATTGATGATACGAAATGATAAAAATCAACGGCATCACATAAATGCCATCGAACAACAATTAAAACATTTATCCAATAAAAATTTGAATAATTCAAATACCACCAATAATAACAATACCAAAAGTAATAATAACAACAACAACAACAACAATAACAACACAAAAGATACACCGGATGCGACACAAGGTTCCCTCGGCGACAAACAAATCAATTTTCCAATTGATGATTTTGATTCAGTTGGCATGGTGGATATTGCAATCAATGGTTTACCATTCCTATCATCATCAGCTGCCGCCAACGAAGAGCCACCACATCTATTCAACGATGAACTTAACGATTTCGATGATTCGGAAACCGGCTCCAATGCAAATACCAGGGATAAAATTAAATTGGAACCGCTCACTGAATGCCGAGGTCAGTAA
- Protein Sequence
- MEQTSVLGRKEAKILENSQGWPGVPTTNSLAESYQYQLQSMWQKCWNTNQNLVHHLRFRERGPLKSWRPETMAEAIFSVLKDGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSMESSLDLRPKGRGRPQRILLGIWPDDHIKGVIKAVVFRDAKDLKDDPSIHLAAAAAAAAAAAAYGGHSPVYPFHDGAIPGFPSSAACSNGLLSANQSAGETISSEAAVAMAAVMGLRQQHLNASAINQHHSDTDLTNFRSATDSGGVGCLKQPKLGSPATSSQSNNNEINFPMPRLASPAIPSIHSISGLSSLHLMQQHNLSTGDLIANRSRNQCNDARSTPPHTEISKFTGHIDTLMIRNDKNQRHHINAIEQQLKHLSNKNLNNSNTTNNNNTKSNNNNNNNNNNNTKDTPDATQGSLGDKQINFPIDDFDSVGMVDIAINGLPFLSSSAAANEEPPHLFNDELNDFDDSETGSNANTRDKIKLEPLTECRGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -