Mdes004102.1
Basic Information
- Insect
- Mayetiola destructor
- Gene Symbol
- -
- Assembly
- None
- Location
- GL501427.1:542169-543677[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.4e-08 0.00012 22.0 0.0 9 45 235 271 228 271 0.89 2 4 3.7e-08 4.9e-05 23.3 0.0 5 41 281 317 278 321 0.88 3 4 0.00041 0.54 10.3 0.0 23 39 347 363 335 367 0.84 4 4 1.6e-09 2.1e-06 27.7 0.0 5 36 388 418 386 420 0.93
Sequence Information
- Coding Sequence
- ATGCATTTCCTAAACTGGAAAAATCAGAAAAAGACCATAATAAATGAGCAACAATATTTATTCAACAATAGTATAGCATGTGATTGTATATTGATCTCAGCCGAAGGTAAAGTAAGTGCTTGTCATAAGCTCATTTTATCATCGGCGAGCGAATTCTTTCGCAAACTATTATCAGAAGTGCCTGCAACAATCGAGCCAACAATTCATATACCTGATGCCGATTCGGATGTATTGGAAGCAATGCTAAAATTTATTTATACGGGCGAAACGAATATTTCAATAAGTCATTTGACTGATTTGCTGGAACTTTGCGAGCAAGAAACAAACAGAAGCCACAAAACCACAACGTTATGTCAAGACAATACTACGGATGATGAATATTACGAAATAACGGCCGAAGAACCAGAAATTATTGATCTTCCAGTGGAAGAGGACGTAGAAGAGGAATTTGACGTCGAATATTTATATGAAGATAGTTTGATTGAAATAAAGGATGAAGCAATCGAAAGTTCTCTAGAAATTGAGCAGAATATCGATGAATCTGTTTGCCTCACGCTCGACGACGACTATGACGATGACAAATCGATTGAAGATGATCTGAACGAATCAAATGATGAAGCTTCAAAATCCAGTAATTCACCGTCCAAAAGAAAGAAGGTCATTCAACGAACAGGAAATACACGTTTTCAAATCAGTGAAGTTCTCAACGAAGTACAAAAAGGCGATCGGACCATTCATCGACTGTCAGTGGATTATAATGTACCACGTTCAACTCTCTATCATTATTTCCGTAACAACGAGTATTTAAAACGAAACTATCGCTCGGAACGTAAAAAGAGTCTTGAAGATGCTGTTAATGCGGTTTTATATGAAAGAACAAGTCTGAAAAAAGCATCGGACAAGTTTCATGTTCCGAAAACAGCGATTTGGCGTGAGGTTCGCAAATATGAGCAATACCAACCAACAAATAAAGAAATATCCGAAGAACGACTGAATGCCCAACAAGAAATTCTTGAGGGTAGAAGTTTGACAGCGATAAGTGCAAAATATGGTATACCGATGACAACACTGCATCGAGATAAAAAGAGATTATCGATAGAAGGAAAGTTGTTAATTAATCCTGTGCGGGACAGAACCGAAAATTCTGAGTACAAAAAACGCTTGGAAATGGCATTACAGAAATGCAAGGAAGGTATGTCACAATACAAAGCTGCCAAACTTTATCAAATACCCAAAGCGACAATGTGGCGTCATGCACACTGTGCATTGTAA
- Protein Sequence
- MHFLNWKNQKKTIINEQQYLFNNSIACDCILISAEGKVSACHKLILSSASEFFRKLLSEVPATIEPTIHIPDADSDVLEAMLKFIYTGETNISISHLTDLLELCEQETNRSHKTTTLCQDNTTDDEYYEITAEEPEIIDLPVEEDVEEEFDVEYLYEDSLIEIKDEAIESSLEIEQNIDESVCLTLDDDYDDDKSIEDDLNESNDEASKSSNSPSKRKKVIQRTGNTRFQISEVLNEVQKGDRTIHRLSVDYNVPRSTLYHYFRNNEYLKRNYRSERKKSLEDAVNAVLYERTSLKKASDKFHVPKTAIWREVRKYEQYQPTNKEISEERLNAQQEILEGRSLTAISAKYGIPMTTLHRDKKRLSIEGKLLINPVRDRTENSEYKKRLEMALQKCKEGMSQYKAAKLYQIPKATMWRHAHCAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00957279;
- 90% Identity
- iTF_00957279;
- 80% Identity
- iTF_00957279;