Mdes007002.1
Basic Information
- Insect
- Mayetiola destructor
- Gene Symbol
- -
- Assembly
- None
- Location
- GL501445.1:1184638-1188914[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.7e-12 1e-08 35.1 0.0 1 39 225 264 225 268 0.90 2 4 2.2e-13 2.9e-10 40.0 0.1 2 39 280 317 279 320 0.94 3 4 1.4e-17 1.9e-14 53.4 0.0 1 45 334 379 334 379 0.97 4 4 2.1e-16 2.8e-13 49.7 0.0 2 41 387 427 386 430 0.94
Sequence Information
- Coding Sequence
- ATGGTTGGAGTTACAATGGGTTTTTTGGATTTTGCTCCAGAACCACCTGCACCGACGGCCACACCAGTTAAAGTAACGGAAAACGTTAATCTCAATTGTACATCGAACAACGATGCCAGAGACTTGTCAAACTTAACTCCAAATGGTGAAGTTCGAATTAAATTTGAAACACTTCGTTCACTTGATCCCGAAACTTTAGAAATTGATAATCGTGCGGCTCCGGTACAATATTCGATGCAGCAACTTGATCATTTTCAACAGATTCAGCAAATGATTCATAACCAACAAATGCCTTCAGATGCATCGAATGCACGCCAACAACAATCAAACAATGCACAACCAATGCAAATCGATCATTATCAACAAATGACTGCCTCTGGTCACAATAACCATACAAATCAAACACAACAACCGATTCATAGCCAACAAATGCCTTCACAACCATCGACACCGCATCAACAGCAACAGTCACAAGCCAATCATGAAATTGATTTGAGTGTCGTGAAACAAGAGAGCCGACCGAAAAAGAAGAAATCCAAGAAGAATAACCATCACCAAATGGACACTAGTACCGATACATTGAATGACTCGACAACCGATCGTTCATCGCCACAATATACCAATTTGACATCACAAAATGAGAAAAATGCACAAAACAGCCCAAAAACATGGACCCAAGATGATATGGATTCAGCATTGGATGCTCTCCGTAATCATAATATGAGCTTAACAAAGGCATCCATGACATATGGTATACCATCGACAACATTATGGCAACGTGCCCATCGTTTGGGCATTGATACGCCGAAAAAAGATGGACCAACCAAATCATGGAATGAAGATTCATTGAATAATGCATTAAATGCTTTGCGCACTGGTCAAATATCAGCTAATAAAGCATCAAAAGCATATGGCATTCCATCGTCAACATTATATAAAATTGCACGACGCGAAGGTATACGTTTGGCAGCACCATTTAATGCTGCACCAACAACATGGTCACCGGAAGATTTGGAACGTGCTCTGGAAGCAATTCGCGGTGGTCATACATCCGTTCAAAAAGCAAGCGCTGAATTTGGTATACCAACTGGTACATTATATGGACGATGCAAACGTGAAGGTATCGAATTATCACGTTCAAATCCAACACCATGGTCCGAAGATGTAATGCTTGAAGCATTGGATTCCGTACGTTTGGGACAAATGTCTGTTAATCAAGCGGCTATTCATTATAATTTGCCGTATAGTTCGTTATATGGACGCTTTAAACGTGGCAAATTCGATACAAATGGTTCAACTGATAATTTGAACACATCACAAGAACAACAATCGCAAAATCAAACTCAACAATCCCAGCAGCAGCAACAGCAACAACAACAACAACAACAACAACAGGCTAATAACCAGAATTCACATCAACAAAGCCAACAAGCTGCACAGAATGCAATTCAAACAACTCAATCACATCATGCCCAAGTCGTCCAATCACATTCACACTCAGCTTCACAGCAAATCGATCCCTCACATCACGTTATTCAATTGCATCATCAACAGCAAAAGTATCAACCGTCTCCGCAACCGATTTCAATCAATACTTTCCAATATAATCCGGGTCCAAGCACAATTCAATCGCTCCAACAGAATCCTCACATTCTTCATAATCTCCATTTGCCACATCAATTGATCACATCGCAAACTCCATTATCGAATTTGAATTTGCATCAAATTCAACCGCAACAAATTCAAATTCATCACATTCAGCATCCGTTGAGCCGTCAACAAATGTAA
- Protein Sequence
- MVGVTMGFLDFAPEPPAPTATPVKVTENVNLNCTSNNDARDLSNLTPNGEVRIKFETLRSLDPETLEIDNRAAPVQYSMQQLDHFQQIQQMIHNQQMPSDASNARQQQSNNAQPMQIDHYQQMTASGHNNHTNQTQQPIHSQQMPSQPSTPHQQQQSQANHEIDLSVVKQESRPKKKKSKKNNHHQMDTSTDTLNDSTTDRSSPQYTNLTSQNEKNAQNSPKTWTQDDMDSALDALRNHNMSLTKASMTYGIPSTTLWQRAHRLGIDTPKKDGPTKSWNEDSLNNALNALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPEDLERALEAIRGGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDVMLEALDSVRLGQMSVNQAAIHYNLPYSSLYGRFKRGKFDTNGSTDNLNTSQEQQSQNQTQQSQQQQQQQQQQQQQQANNQNSHQQSQQAAQNAIQTTQSHHAQVVQSHSHSASQQIDPSHHVIQLHHQQQKYQPSPQPISINTFQYNPGPSTIQSLQQNPHILHNLHLPHQLITSQTPLSNLNLHQIQPQQIQIHHIQHPLSRQQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -