Basic Information

Insect: Marronus borbonicus
Gene Symbol: -
Assembly: GCA_902655005.1
Location: LR737401.1:1665122-1667155[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 6e-05 0.0049 17.3 2.9 1 20 120 139 120 140 0.96

2 8 2.2e-05 0.0018 18.7 0.6 2 23 149 170 148 170 0.96

3 8 6.6e-07 5.4e-05 23.5 0.5 1 23 176 198 176 198 0.98

4 8 7.3e-06 0.0006 20.2 2.7 2 23 205 226 204 226 0.94

5 8 4.3e-06 0.00035 20.9 1.9 1 23 232 254 232 254 0.97

6 8 2.9e-05 0.0024 18.3 3.8 1 23 260 282 260 282 0.97

7 8 1.1e-05 0.00092 19.6 1.6 1 23 288 310 288 310 0.97

8 8 2.1e-07 1.7e-05 25.1 2.6 1 23 316 339 316 339 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	6e-05	0.0049	17.3	2.9	1	20	120	139	120	140	0.96
2	8	2.2e-05	0.0018	18.7	0.6	2	23	149	170	148	170	0.96
3	8	6.6e-07	5.4e-05	23.5	0.5	1	23	176	198	176	198	0.98
4	8	7.3e-06	0.0006	20.2	2.7	2	23	205	226	204	226	0.94
5	8	4.3e-06	0.00035	20.9	1.9	1	23	232	254	232	254	0.97
6	8	2.9e-05	0.0024	18.3	3.8	1	23	260	282	260	282	0.97
7	8	1.1e-05	0.00092	19.6	1.6	1	23	288	310	288	310	0.97
8	8	2.1e-07	1.7e-05	25.1	2.6	1	23	316	339	316	339	0.96

Sequence Information

Coding Sequence: atgcaAGCTACATGCCCTCAGTGCAAGAACCTTTTAAAAACGCCATGCTGTAGATTGATTCAGGATGCATGCGGGCATCAAAAATGTAGATTATGCTTATTGAAAGATGAAGACAAATGCAGTTTATGCCTTAACGTTGAGCAGAGTGACACGGTAGCACATAACAGTGTTATAAAATACGAGGATAATCATACAGCGGTAATTGCATTTAAGAGTAGCAATAGTGTTGCCGAAACATCGAACGATTCCAAAACTAGCGATGTAAAACAACAAGAGAAAACGGAATCGAATAAGCGTTTTTATCAAACATTGCCCATTCCAAACCATATAACAGTAAGCAATGAACTTCCTATTCAGTATACCTGTAAAATATGTGggagaaattttaaaacaaggTCTCATATAAAATATCATCAGTATTGCGCTACTGGGAAAAAGCCATTACAATGTGCCTATTGTTCCAAAGAGTTTATTACTAAAGCTCACTTAGAACTTCATATCTTGAATCATACAGGTAGAAAGCCGTATTCCTGCGACACCTGTGGAAAACCGTTTGTGCAATATGCGAAATTAAAACGGCATATGCTGCtgcattcaaatttaaagcCGTGCGTTTGTCAGAAGTGCGGTAAATCTTTCCGAACTAGCGATAAGTTAAAGGTGCATTCTTTAATTCATTCGAAAGAAAAACCGTTCGCATGCAAACAGTGCAAGTCCAAGTTCAATAATTCGTCAAATTTAAAGAAGCATATGGCGGTCCATATAAaggAAGGCATTCATATGTGCGATCAATGTGGGAAGAGGTTTAAGTTGAGATCAACCTTAATGACACATCGTAAAATACATTCTAACAATAAATCGCACCAGTGCCCTACTTGTActaaagcattttataatttgaaagactTAAAAAGGCATGCATTGATACATGCAGATGAAAAAGCATTCAACTGTGATATGTGCAACACCTCCTTCCGCCGAAAGGACAACTTAAATAGGCACTTAAGGAATACACATCCTGGTAAAGAAGCTTCTTACACACAAAAAACGGTTAAAGCGCCAGTGTCCAAACCGTCAGTGGTTGAAAGTCCAAATGCCATAAAGGTTATTACACCATCGCCTGCCTGTAATATTAGGAAACAAGAAGTTGTTGAACGCGACCAAAGAACAGTGCCTGTAATAAATGGCCCAATAAAATTAGCTTCTAAGACGACTGCATTCAAGGACTGCTACAATATTAATAGGCAAGTTGATTCGTGCAAAAATCCATCCGAAACTACTGAAAGCGTAAACATTTACGAGAAAATTCTTCTTCCCAACAATAACATCCCCAAAGTTAGCGAGATACAAACCGTAAGGAAACCAGCTGAAGTCTTAAAAAGTGATTTCCTACCTCTTCACTATGGCACTTCTTTCGAACATAAAACTCATgccgttattaaaaatattaaattcaaactGCCGAAGGAGTACTTGAACTTGTCCAACAAAGACGAGCCCAGTAATGGGGCGACGCAAAACAATAAAGATCCCAGACTCAACGTAGGTAcatcaaatgtaataaacaataataataagacgaCTGTCGAGCCTCATAGCGAAGTTACAAGCGTTATTGTGAATCCGATAAATAGCCAAATCTCTGATGTTCACTGGAGGAAAAGGACGACGCAAAATTTTAATGCTAGTCATGTAGAAAGTTAA
Protein Sequence: MQATCPQCKNLLKTPCCRLIQDACGHQKCRLCLLKDEDKCSLCLNVEQSDTVAHNSVIKYEDNHTAVIAFKSSNSVAETSNDSKTSDVKQQEKTESNKRFYQTLPIPNHITVSNELPIQYTCKICGRNFKTRSHIKYHQYCATGKKPLQCAYCSKEFITKAHLELHILNHTGRKPYSCDTCGKPFVQYAKLKRHMLLHSNLKPCVCQKCGKSFRTSDKLKVHSLIHSKEKPFACKQCKSKFNNSSNLKKHMAVHIKEGIHMCDQCGKRFKLRSTLMTHRKIHSNNKSHQCPTCTKAFYNLKDLKRHALIHADEKAFNCDMCNTSFRRKDNLNRHLRNTHPGKEASYTQKTVKAPVSKPSVVESPNAIKVITPSPACNIRKQEVVERDQRTVPVINGPIKLASKTTAFKDCYNINRQVDSCKNPSETTESVNIYEKILLPNNNIPKVSEIQTVRKPAEVLKSDFLPLHYGTSFEHKTHAVIKNIKFKLPKEYLNLSNKDEPSNGATQNNKDPRLNVGTSNVINNNNKTTVEPHSEVTSVIVNPINSQISDVHWRKRTTQNFNASHVES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00626456;
90% Identity: iTF_00627576; iTF_00626456; iTF_01121053;
80% Identity: -