Basic Information

Insect: Marronus borbonicus
Gene Symbol: -
Assembly: GCA_902655005.1
Location: LR737382.1:15218610-15224323[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0027 0.22 12.1 2.2 3 23 51 72 49 72 0.95

2 16 0.07 5.7 7.7 0.5 1 23 92 114 92 114 0.97

3 16 0.0062 0.51 11.0 0.7 1 23 118 140 118 140 0.98

4 16 0.0061 0.5 11.0 0.2 1 23 146 169 146 169 0.98

5 16 0.00059 0.049 14.2 0.6 1 23 175 197 175 197 0.95

6 16 0.44 36 5.2 0.3 5 23 207 226 204 226 0.90

7 16 1.5e-05 0.0012 19.2 2.6 2 23 238 259 237 259 0.98

8 16 2.6e-05 0.0021 18.5 0.2 3 21 270 288 268 289 0.92

9 16 0.0032 0.27 11.9 0.5 1 23 382 405 382 405 0.95

10 16 0.0063 0.52 11.0 0.9 1 23 426 448 426 448 0.98

11 16 0.0016 0.13 12.9 1.3 1 23 452 474 452 474 0.98

12 16 0.00041 0.034 14.7 0.6 1 23 481 504 481 504 0.98

13 16 0.18 15 6.4 0.5 1 22 510 531 510 532 0.74

14 16 0.011 0.89 10.2 1.1 3 23 540 561 538 561 0.89

15 16 2.9e-06 0.00024 21.5 0.4 2 23 573 594 572 594 0.98

16 16 0.048 4 8.2 1.2 3 20 606 628 604 630 0.69

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0027	0.22	12.1	2.2	3	23	51	72	49	72	0.95
2	16	0.07	5.7	7.7	0.5	1	23	92	114	92	114	0.97
3	16	0.0062	0.51	11.0	0.7	1	23	118	140	118	140	0.98
4	16	0.0061	0.5	11.0	0.2	1	23	146	169	146	169	0.98
5	16	0.00059	0.049	14.2	0.6	1	23	175	197	175	197	0.95
6	16	0.44	36	5.2	0.3	5	23	207	226	204	226	0.90
7	16	1.5e-05	0.0012	19.2	2.6	2	23	238	259	237	259	0.98
8	16	2.6e-05	0.0021	18.5	0.2	3	21	270	288	268	289	0.92
9	16	0.0032	0.27	11.9	0.5	1	23	382	405	382	405	0.95
10	16	0.0063	0.52	11.0	0.9	1	23	426	448	426	448	0.98
11	16	0.0016	0.13	12.9	1.3	1	23	452	474	452	474	0.98
12	16	0.00041	0.034	14.7	0.6	1	23	481	504	481	504	0.98
13	16	0.18	15	6.4	0.5	1	22	510	531	510	532	0.74
14	16	0.011	0.89	10.2	1.1	3	23	540	561	538	561	0.89
15	16	2.9e-06	0.00024	21.5	0.4	2	23	573	594	572	594	0.98
16	16	0.048	4	8.2	1.2	3	20	606	628	604	630	0.69

Sequence Information

Coding Sequence: ATGTTTATATCCAAAAAGGTCCACGTGGGAAGCGTTATCTATCCTACTTTCACCCGTTTAGGTAtGACAACGATTTTCGATGTTTCTTTCGACATTTCCGCCACCTCCAGTACAAGGCCAAGGAGACGGAAACGAGGACCACCGTGGTTCTGCGAGAAATGCCAAATTCATTTCAAGAACAGGGTCTCCCTGTACAATCACAAACGCGAAGCCCACATCCAGTTACCCAAGGATCACCTCTCCAGCTACACGTACAACCCGCAAACTGAAAAATTCGCCTGTAAGATGTGCAAAGTAGAAACGAAATTGAAAGAGAAGATGACTGCCCACGTTCTAACGCACGAAGAGAAGTTCACTTGTCAGGTCTGCAGCGAAGTAATTTATTCGGCTTATAGATTTTCGGTCCACATGAGGAAGCACAACAAAGAGGGCGGTTATAAATGCCCTTTCTGCGTTTATATTTCGAGCAGGCCTTCGGGAATCTTCGTACATATCAACAGGATGCATTTGGGAAGGTATGCCTACATGTGCAAGCATTGCGGTAAAGGATTCGACGACGTGGTCATGTATAAGGAGCACGAAGCTTCTCACGAAAGAGCCCAGACCGTTTCCTGCATCGTCTGCAACAAAGAATTCGCTTTCACGAGGTACCTGGTTTACCATCAAATAAACTATCACACGGTATCAACTGTAGACCCGAAATCGCAAAACAAATGCGAGATCTGCAACAAAACCTTCATTAGGAAACGCATCCTTAAGACGCACATGAAAACTCACGAACAAGACAAAAGCATCCGATCCCATCTTTGCGAGTGGTGCGGGAAGAGTTTCCGAGATAAGACCTCGTTGAACGGTCACATTATGATCAAGGGAGATCTGGATGTAATATCTGAAGTTTCACAACAGCATATCCCACCCTTGAATCGCTCCAAGTGTAAATTCGGCAGTATGCCGCATGTCACGTTTCTCCGCGACTATGTGAGTCTCAGTGTCGACGACATTACGCCGCCCGTTGTCGGGAAAGCTAAGAGCTCGGATTTGACTGTCGACAGCAATCTTGCAAACGTATCAGGAGAATCtcttaatatattaaaaagaaaGACGTTGAAGAATACGAAAAGTCGGAAAAGGAAAAAGCACAACTTCATATGCAAACTGTGCGATGCGAAATTCGATTCTAGAAAAAGCATGATCGAGCATAAGAGGGCCGACCACGCGTACGGCTTTAAAGATAACATCATCTATTATTACCTGTTCAATAACGCCACGCAAATGTATAGTTGTAAGACTTGCGACCACGAAACCGAGAGCAAGGAAGAGATCGAGGTGCACGTCAAAACTCACGAGGAAACGTTCAAGTGCGAAACGTGCGACGACGTCTTTTCTAACGCTTACAAGTACTCCTTACACGTCAAAAAACACGAAGCGGACGGCTCCGACTACAAATGCCCTTTGTGCAGTTACACGACGCCTAGAAGGACCTCTATGTCGCAGCATATAAACATGATCCATTTAAAACGGTATCTCTATTACTGCCAATTTTGCGGGAAGGGTTTCGGGGACGTGATGATCTACAAAGAACACGAAAATATTCACATGGGCGCAGGTCCGTTAAGCTGCATAGTTTGTCAGAAAACCTTTTCGTTCACGAGGAATTTAGTCCAGCATCAAGTTAGATTCCATAAAGCTGGAATTTTAGGTGTTCAAGTCAAAAATCAATGCCCCGTATGCAAGAGGACGTATTCCAAAGCGTCAACGCtagaaaatcatattaaaatacacGAAGCCAAAGCCCCAAGGCCTAAAACCCACCTCTGCGACACTTGCGGGAAGGGTTTCGCTCAGAAAAGTTTTGTTTCGAACGCCTCGTTAAAAATCCATCAAAGTAAATGCGGCGGTTAA
Protein Sequence: MFISKKVHVGSVIYPTFTRLGMTTIFDVSFDISATSSTRPRRRKRGPPWFCEKCQIHFKNRVSLYNHKREAHIQLPKDHLSSYTYNPQTEKFACKMCKVETKLKEKMTAHVLTHEEKFTCQVCSEVIYSAYRFSVHMRKHNKEGGYKCPFCVYISSRPSGIFVHINRMHLGRYAYMCKHCGKGFDDVVMYKEHEASHERAQTVSCIVCNKEFAFTRYLVYHQINYHTVSTVDPKSQNKCEICNKTFIRKRILKTHMKTHEQDKSIRSHLCEWCGKSFRDKTSLNGHIMIKGDLDVISEVSQQHIPPLNRSKCKFGSMPHVTFLRDYVSLSVDDITPPVVGKAKSSDLTVDSNLANVSGESLNILKRKTLKNTKSRKRKKHNFICKLCDAKFDSRKSMIEHKRADHAYGFKDNIIYYYLFNNATQMYSCKTCDHETESKEEIEVHVKTHEETFKCETCDDVFSNAYKYSLHVKKHEADGSDYKCPLCSYTTPRRTSMSQHINMIHLKRYLYYCQFCGKGFGDVMIYKEHENIHMGAGPLSCIVCQKTFSFTRNLVQHQVRFHKAGILGVQVKNQCPVCKRTYSKASTLENHIKIHEAKAPRPKTHLCDTCGKGFAQKSFVSNASLKIHQSKCGG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -