Mbor007528.1
Basic Information
- Insect
- Marronus borbonicus
- Gene Symbol
- -
- Assembly
- GCA_902655005.1
- Location
- LR737380.1:23747136-23749254[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0068 0.56 10.9 0.0 1 21 197 217 197 218 0.94 2 13 0.1 8.3 7.2 6.9 2 23 226 247 223 247 0.95 3 13 0.72 59 4.5 0.1 9 23 276 290 274 290 0.93 4 13 8.6e-05 0.0071 16.8 7.2 2 23 324 345 323 345 0.96 5 13 4e-06 0.00033 21.0 0.3 1 23 350 372 350 372 0.98 6 13 3e-06 0.00025 21.4 0.2 2 23 379 400 378 400 0.97 7 13 2.8e-05 0.0023 18.4 0.8 1 23 405 427 405 427 0.98 8 13 5.2e-06 0.00043 20.7 4.9 2 23 434 455 433 455 0.96 9 13 2.4e-05 0.0019 18.6 0.4 1 23 460 482 460 482 0.97 10 13 2.1e-07 1.7e-05 25.0 1.8 2 23 489 510 489 510 0.98 11 13 2.6e-06 0.00021 21.6 0.5 1 23 515 537 515 537 0.98 12 13 7.5e-08 6.2e-06 26.5 3.0 2 23 544 565 543 565 0.97 13 13 4.1e-06 0.00034 21.0 2.9 1 22 570 591 570 591 0.95
Sequence Information
- Coding Sequence
- ATGTCAACTGAAGTTATAGTTAAAGAGGAAAGCGATCTGACTGAGTTTATAGACGTTCCAGACGATATCTCACTTGACTTGGCTGATTGCTGCAGAACATGCTTACGACATGATTGTTCATTGATACCAATAAATTCGTTGGATAGCGACTCCATAAAATTCAGTGAAAAATTAAGGGTCTGCCTATTAGAAATGAAGTGGGCAAAGGAGAGGGTGCCTTCTTTTATTTGTGGAATATGTATAGAAAAACTAAGAATTGCCTATGATTTCCAAATACTTTGTGCACAGTCGAATCGAGCTCTTCAATTAGAAGGAGAAGCAAGTGGAAAATCAAGTTCTAGGAATTCAACTTTAAATCCTCTCGTAACGACGGGCTTAGCAGTATGTGATGAAACAGTGGGggatgttattttaaatataaaatttgaggaAACACAAACACAGATCATACCTCAGTATGCTCCAGTTACCTCGGATGCAGTGAAATTAGAAGGTACACAGGCACTagataatattgataaatatggTTGCCAGATTTGCGGAAAAGAATTATGTGAGCATATTCCTGGGCACCTAGATGAAAAACTCTTTCAATGTTTGGTGTGCCTCAAACAGTTTACGACAATAGCTGAACTAATTGTGCATGTACAAGTTCAGACTAGGAAAAAATGTGATACTTGTTATTTTTGTGagaagaaatgtaataatgaaTCCGAGTTACTACTCCATATATGTTCACATACAGCTGAGGAAGAATATCTGTCGAACTCGTACTTAAGAACCTCTAGTAGCAACAAGCCTTGGCAATGCAGAATCTCTAATAATGTATATACAAACCCTTCTCAATTTTTAGCACACACAGAAACACATATTGGAGAGaagttttcttataaattatgTGGTAAAGAGTttgtagaatatttttctttaattacacgTATGAAAAGGCACACTAGCGATAAACCTTGGTGTTGCCAAATCTGTAAGAAGTCATATACACATTTTTCCCACCTTGCAGCACATATGAAGAAACATATTGCAGAGAAGTATTCTTGTGAAGTATGTGGTAAAAAGTTTACATGGTCTGCCTCTTTAAATGTACATATGAAAAGTCATACTGGCGACGAACGTTGGCAATGTCAAATCTGTAAGAAATCATATGCAGTATCTGCTCAACTTTCGGCGCACATGAAGACACATACCGGAGAGAAGTTTTCATGTAAATTATgtgataaaaaatttatatgGTCTGCTTCTTTAAATGCACATATGAAAAGACATACTGGTGACAAACTTTGGCATTGTAAAATCTGTGGCAAATCATATACACATTCTTCTCATCTTTCGGGGCACATGAACATACATACCGGAGAGAAGTTTGCTTGTAAATTATGTGATAAAAAGTTTACATGGCCTGGttctttaaatatacatatgaaaAGTCATACTGGCGACGAACGTAGGCAATGTCAAATCTGTAACAAATCATATACAACATCTTCTCAACTTTCGGCGCATATGAAGAAACATACTGGAGAGAAGTTCTCCTGTGAATTATGTGATAAGAAGTTTGCGTGGCCCGATTCTTTAAATAGACATATGAGAAGACATACTGGTGATAAACTTTTACAGTGTAACATCTGTAACAAATCATATACAACATCTTCTCACCTTTCAGTACATATGAAGACACATACTGGAGAGAAGTTTTGCTGTAAATTATGTGATAAACAGTTTACACGATCTGATTCCTTAAATGCACATATGAAAAGAGGTATTTGcgaaaaatcttaa
- Protein Sequence
- MSTEVIVKEESDLTEFIDVPDDISLDLADCCRTCLRHDCSLIPINSLDSDSIKFSEKLRVCLLEMKWAKERVPSFICGICIEKLRIAYDFQILCAQSNRALQLEGEASGKSSSRNSTLNPLVTTGLAVCDETVGDVILNIKFEETQTQIIPQYAPVTSDAVKLEGTQALDNIDKYGCQICGKELCEHIPGHLDEKLFQCLVCLKQFTTIAELIVHVQVQTRKKCDTCYFCEKKCNNESELLLHICSHTAEEEYLSNSYLRTSSSNKPWQCRISNNVYTNPSQFLAHTETHIGEKFSYKLCGKEFVEYFSLITRMKRHTSDKPWCCQICKKSYTHFSHLAAHMKKHIAEKYSCEVCGKKFTWSASLNVHMKSHTGDERWQCQICKKSYAVSAQLSAHMKTHTGEKFSCKLCDKKFIWSASLNAHMKRHTGDKLWHCKICGKSYTHSSHLSGHMNIHTGEKFACKLCDKKFTWPGSLNIHMKSHTGDERRQCQICNKSYTTSSQLSAHMKKHTGEKFSCELCDKKFAWPDSLNRHMRRHTGDKLLQCNICNKSYTTSSHLSVHMKTHTGEKFCCKLCDKQFTRSDSLNAHMKRGICEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -