Basic Information

Insect: Marronus borbonicus
Gene Symbol: -
Assembly: GCA_902655005.1
Location: LR737405.1:1311083-1313415[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.8e-05 0.0023 18.4 0.3 1 23 182 204 182 204 0.99

2 12 0.00027 0.022 15.3 1.9 1 23 210 232 210 232 0.94

3 12 0.00046 0.038 14.5 1.6 3 23 244 265 243 265 0.95

4 12 8.6e-07 7.1e-05 23.1 1.4 1 23 276 298 276 298 0.97

5 12 6.5e-06 0.00053 20.4 1.2 2 23 305 326 304 326 0.96

6 12 5e-09 4.1e-07 30.2 2.1 1 23 332 354 332 354 0.98

7 12 3.1e-08 2.5e-06 27.7 1.3 1 23 360 382 360 382 0.99

8 12 0.00013 0.011 16.2 1.3 1 23 388 410 388 410 0.98

9 12 0.00026 0.021 15.3 6.1 1 23 416 438 416 438 0.98

10 12 9.5e-07 7.8e-05 23.0 0.8 1 23 444 466 444 466 0.99

11 12 1.3e-05 0.0011 19.4 2.9 1 23 472 494 472 494 0.99

12 12 4.3e-06 0.00035 20.9 5.5 1 23 500 523 500 523 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.8e-05	0.0023	18.4	0.3	1	23	182	204	182	204	0.99
2	12	0.00027	0.022	15.3	1.9	1	23	210	232	210	232	0.94
3	12	0.00046	0.038	14.5	1.6	3	23	244	265	243	265	0.95
4	12	8.6e-07	7.1e-05	23.1	1.4	1	23	276	298	276	298	0.97
5	12	6.5e-06	0.00053	20.4	1.2	2	23	305	326	304	326	0.96
6	12	5e-09	4.1e-07	30.2	2.1	1	23	332	354	332	354	0.98
7	12	3.1e-08	2.5e-06	27.7	1.3	1	23	360	382	360	382	0.99
8	12	0.00013	0.011	16.2	1.3	1	23	388	410	388	410	0.98
9	12	0.00026	0.021	15.3	6.1	1	23	416	438	416	438	0.98
10	12	9.5e-07	7.8e-05	23.0	0.8	1	23	444	466	444	466	0.99
11	12	1.3e-05	0.0011	19.4	2.9	1	23	472	494	472	494	0.99
12	12	4.3e-06	0.00035	20.9	5.5	1	23	500	523	500	523	0.97

Sequence Information

Coding Sequence: ATGAAATTTGATAGAATTTGTCGAATTTGTTTAGTGGAAAAATCTAGTCTGAAATCAATATTCAATGCTTGCATACCAAATATGATAATGAGCCTGGCAGCAGTACAAgtgATAGAAGCAGATGGATTACCCAATCAAATTTGTACGCAATGTTTACAAACAGTAAATCGAgcgtttagttttaaacagCAATGTGAAAAGTCCGATGATATTCTTAGACAATATCTAAACAGTCTcaatattcatatttctttagACGATAGTCAAAATATCATTAGCACCGATAAAAGTGATGGATTGTTTGACAGTAGTGAAGTTCTTCAACAATCTTCcatatttaatgatattttcaaCGATGAACAAACGCATTCCTTGGTCGATAGTTTCACTGCACAGAATGCAGATTTAGCCGAAACTATGCAAAGTTTAAGAACAATCGCCGAACAATGTTTACCGGATACTTGGGAGaatgaacaaaatttgattaaCACACATGAAAATTCCCAGAATGATTCTTGTCCAGAATTTACGTTGGATCAAATTTTTAAGTGCCAATTTTGTGAAGAATCATTTAAAGATGAATGGAGTTTGGGCGTTCATATGAAAATACATACTGgacaagcaaaatattattgtagTGTCTGCGGAAAAGAATGTAATACACcgtttgctttaaataaacattcaacaTTACATACTATTGAAAGGAAcgaacgaagaaaaaatatttgcaatttaTGTGGAAAGGAGTGTGTTGatcttaaatatttgaaaaagcatTACAAAGAGGACCATTTCGATCAAAATGGTTTATCGGAGAAACGGTATGCTTGCAATGTTTGTGGAAAAAACTACAAGCATAGTAAATTATTGACGATTCATATGAGGGCTCATACCGGTGAAAGACCGCTTAACTGCGAGTTGTGCGGGAAAACGTTTTCCTTACCAAGTTCGTTGCACAAACATCGATTAATTCAttcaaacaataagaaacacAAATGCTCTCTGTGCGGGAAAACATTCAGTCAATCTTCCAATTTGGTGGTGCATATTAGAACTCATACAGgagaAAAACCCTATGTTTGCAATATTTGTGGCAAAAAATGCGCAAGCAATGTTAACTTGAAAGTTCATATGAGGACACATTCTGGCGAAAAGCCCTACCGTTGTTTAAAGTGTGAAGGCTCATTTGCTACGAAAGGCCAACTAAGAAAGCATAATATGCGGCACACGGGTGAGCTTCCATACAAATGTTGGCATTGCGGTAAAGCATTTCGTCAGAAAGATACGTGCGATACTCATATGAGGTATCATACGGGAGAGAGACCGTATGTTTGCACGTTATGTCCCAAAAAGTACATTGCTGCGAGCCATTTAAGGGTTCACATGAGAACCCACACAGGAGAGAAGAAATATCAATGTAATATTTGCACGAAAGCATTCACCGAACATAAAACTTTAAAGTCGCATGTACTAACACATACGGGACAGAGACCGTACTCTTGTAAATTTTGTGGTCGATGTTTTACCCAAAATGGCGCCTTGAATACTCATATTAGAAATTGTCAtagtgtataa
Protein Sequence: MKFDRICRICLVEKSSLKSIFNACIPNMIMSLAAVQVIEADGLPNQICTQCLQTVNRAFSFKQQCEKSDDILRQYLNSLNIHISLDDSQNIISTDKSDGLFDSSEVLQQSSIFNDIFNDEQTHSLVDSFTAQNADLAETMQSLRTIAEQCLPDTWENEQNLINTHENSQNDSCPEFTLDQIFKCQFCEESFKDEWSLGVHMKIHTGQAKYYCSVCGKECNTPFALNKHSTLHTIERNERRKNICNLCGKECVDLKYLKKHYKEDHFDQNGLSEKRYACNVCGKNYKHSKLLTIHMRAHTGERPLNCELCGKTFSLPSSLHKHRLIHSNNKKHKCSLCGKTFSQSSNLVVHIRTHTGEKPYVCNICGKKCASNVNLKVHMRTHSGEKPYRCLKCEGSFATKGQLRKHNMRHTGELPYKCWHCGKAFRQKDTCDTHMRYHTGERPYVCTLCPKKYIAASHLRVHMRTHTGEKKYQCNICTKAFTEHKTLKSHVLTHTGQRPYSCKFCGRCFTQNGALNTHIRNCHSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01121040;
90% Identity: iTF_01121040;
80% Identity: -