Basic Information

Insect: Marronus borbonicus
Gene Symbol: -
Assembly: GCA_902655005.1
Location: LR737386.1:15565557-15570508[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.2e-05 0.0018 18.7 4.5 1 23 170 192 170 192 0.97

2 12 3.3e-06 0.00027 21.3 1.3 2 23 197 218 196 218 0.97

3 12 1.8e-08 1.5e-06 28.4 2.5 1 23 224 246 224 246 0.99

4 12 3.1e-05 0.0026 18.2 3.4 3 23 254 274 252 274 0.96

5 12 5.6e-05 0.0046 17.4 0.0 3 23 282 302 280 302 0.96

6 12 2.4e-05 0.002 18.6 2.2 1 23 308 330 308 330 0.98

7 12 3.5e-07 2.9e-05 24.4 0.1 1 23 336 358 336 358 0.98

8 12 5.2e-05 0.0043 17.5 0.7 1 23 364 386 364 386 0.98

9 12 3.7e-06 0.00031 21.1 0.0 1 23 392 414 392 414 0.99

10 12 6.6e-06 0.00054 20.3 3.5 1 23 420 442 420 442 0.99

11 12 0.00039 0.032 14.8 3.7 1 23 448 470 448 470 0.97

12 12 2.8e-07 2.3e-05 24.7 1.2 1 23 476 498 476 498 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.2e-05	0.0018	18.7	4.5	1	23	170	192	170	192	0.97
2	12	3.3e-06	0.00027	21.3	1.3	2	23	197	218	196	218	0.97
3	12	1.8e-08	1.5e-06	28.4	2.5	1	23	224	246	224	246	0.99
4	12	3.1e-05	0.0026	18.2	3.4	3	23	254	274	252	274	0.96
5	12	5.6e-05	0.0046	17.4	0.0	3	23	282	302	280	302	0.96
6	12	2.4e-05	0.002	18.6	2.2	1	23	308	330	308	330	0.98
7	12	3.5e-07	2.9e-05	24.4	0.1	1	23	336	358	336	358	0.98
8	12	5.2e-05	0.0043	17.5	0.7	1	23	364	386	364	386	0.98
9	12	3.7e-06	0.00031	21.1	0.0	1	23	392	414	392	414	0.99
10	12	6.6e-06	0.00054	20.3	3.5	1	23	420	442	420	442	0.99
11	12	0.00039	0.032	14.8	3.7	1	23	448	470	448	470	0.97
12	12	2.8e-07	2.3e-05	24.7	1.2	1	23	476	498	476	498	0.98

Sequence Information

Coding Sequence: atggatgaaaatattgctgttataacaaatattaatcgTTTATGTAGAACATGCCTAACAGAAAAATCAGAAGAAGAATTGCGGTCCATATTCGAAAATTCCATCGATTGTATGTTAAGTGAACTAGCAGATGTTGTAGTGATAGCAAATGATGGATTGCCCAGCTACATGTGTAAAAACTGCGAGCTTCAGCTAGGTTTGGCGCATTCATTTAAACAACAATGTTGCAAAGCAAATGCACAGTTAAAAGAATTACTACTTCCACAAtttaacataaatgaaaaacCTTATGTTATTAACATAAGCAATGGTGTACCAGAAGAAGTCAAATGTGAAGAGCAAATAGCAGCAGATGATATAATATTGCAAGGCCCTAATATTTTAGAACAGctTCCAACGGAAGAAGTAAAGCGCAGTTATACTGACTTGGACTTAGTGGATAATTATTCTGATGAAGAATCGAAATCTGAAGATCAACGAGACAATTTAAATGGGGAAAAGGTGCGATATAAATGTACAGACTGTGGTAAAACATTTAGACTTGAAAGTTGTCTTAAAACACATTCTTTAAAACatggaaagaaaataacatgCAAAATTTGCGGGAAAGAATTTAATCtcgtaaaacatttaaatgcaCATCTTAGAACACACACAGACTATAAGCCCTATTATTGCAAAGTGTGTAATAAGGCATTTACAATGTCGAGCAGTTTAACAAAACATATGAGAACACATGGCGGAGAACGGAAGCATTTATGCATGGAATGTGGAAAGAGATTCCATGAGCCGGGACACTTGGCCATTCATATGCGAACTCACACTGGTGAAAAGCCTATAATTTGTAGTGTTTGTGGCAAAGGTTTCGCAGACCCACGAGGTTTAGTAGCTCACAACAAAACCCACACAGGAGAGAAAAACTATGAATGCGTTACATGCAAAAAGCGATTCGCTCATTCCTTTGCCTTAACCGCCCATAAAAGGATTCATACTGGAGAAAAGCCATACATTTGTTCGATTTGCGGAGCAGCTTTCGCTACGTCTTCTTACTTGACGATTCATACAAGAACCCACACTCAAGAGCGTCCATATAAATGCGAATCATGTCCTAAGGCGTTTGTCAGCAAATGCGCATTGGTTGCTCACAACATGACCCATACTGGTGAAAAACGATTTCAGTGCGGTGTATGCGGGAAGAGAACTGGACGAGCAGCTGATTTAGCTATTCACATGCGGTCGCACACCGGTGAGAGACCATACAGTTGCGATCAGTGTCCGAAGAAATACCATACCTCCAGTAACTTGTCAGCGCATAAAAGAACGCATTTAGGAATAAAGGACCATATATGTTCGATATGTGGCAAGGCTTTCGGGGATTCCAGGACACTTAAGTGCCACACGCGTACGCATACTGGCGAGAAACCGTACATTTGTCACATATGTGGCCGCAGATACACTCAATCGGGTCAATTAGCCGCTCACCGTAAAACACATCGATCTTCAGCCGAGAACGCAGGGTAG
Protein Sequence: MDENIAVITNINRLCRTCLTEKSEEELRSIFENSIDCMLSELADVVVIANDGLPSYMCKNCELQLGLAHSFKQQCCKANAQLKELLLPQFNINEKPYVINISNGVPEEVKCEEQIAADDIILQGPNILEQLPTEEVKRSYTDLDLVDNYSDEESKSEDQRDNLNGEKVRYKCTDCGKTFRLESCLKTHSLKHGKKITCKICGKEFNLVKHLNAHLRTHTDYKPYYCKVCNKAFTMSSSLTKHMRTHGGERKHLCMECGKRFHEPGHLAIHMRTHTGEKPIICSVCGKGFADPRGLVAHNKTHTGEKNYECVTCKKRFAHSFALTAHKRIHTGEKPYICSICGAAFATSSYLTIHTRTHTQERPYKCESCPKAFVSKCALVAHNMTHTGEKRFQCGVCGKRTGRAADLAIHMRSHTGERPYSCDQCPKKYHTSSNLSAHKRTHLGIKDHICSICGKAFGDSRTLKCHTRTHTGEKPYICHICGRRYTQSGQLAAHRKTHRSSAENAG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00626421;
90% Identity: iTF_00626421;
80% Identity: -