Mbor017383.1
Basic Information
- Insect
- Marronus borbonicus
- Gene Symbol
- ZNF296
- Assembly
- GCA_902655005.1
- Location
- LR737382.1:15265859-15268750[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.4 33 5.3 1.9 2 23 95 115 94 115 0.94 2 20 1.4e-05 0.0012 19.3 0.2 1 23 117 139 117 139 0.99 3 20 0.024 1.9 9.2 0.2 1 23 144 166 144 166 0.97 4 20 0.2 16 6.2 0.3 1 23 170 193 170 193 0.94 5 20 0.0024 0.19 12.3 0.1 2 23 200 221 200 221 0.96 6 20 0.00046 0.037 14.6 1.8 1 23 227 250 227 250 0.95 7 20 0.00015 0.012 16.1 1.2 1 20 261 280 261 281 0.96 8 20 1.1e-05 0.00094 19.6 0.0 2 23 293 314 292 314 0.97 9 20 1.9e-05 0.0016 18.9 0.9 1 23 320 342 320 342 0.98 10 20 0.00025 0.02 15.4 1.8 2 23 442 464 441 464 0.94 11 20 1.4 1.2e+02 3.5 3.0 1 23 484 506 484 506 0.98 12 20 0.017 1.4 9.6 2.9 1 23 509 531 509 531 0.97 13 20 0.00036 0.029 14.9 0.4 1 23 536 559 536 559 0.98 14 20 3e-06 0.00024 21.4 0.1 1 23 565 587 565 587 0.97 15 20 0.0074 0.61 10.7 0.9 1 23 593 616 593 616 0.94 16 20 8.3e-05 0.0068 16.9 0.3 2 23 628 649 627 649 0.97 17 20 2.4e-06 0.0002 21.7 1.6 3 23 661 681 659 681 0.96 18 20 4.5e-06 0.00037 20.9 1.6 1 23 687 709 687 709 0.99 19 20 1.4e-07 1.2e-05 25.6 1.0 1 23 715 737 715 737 0.98 20 20 0.00067 0.055 14.0 0.7 1 20 743 762 743 764 0.94
Sequence Information
- Coding Sequence
- ATGTCCCAAATAATTCGATTAATAAATCTCATTTTTAggttaacttttaaaaatttcggaCAATTGGCGGTCTTCGTAATCGAAGATGAGACATCAGACCATGAGGAAGATGTTAACCTAAACCCTTTTCAATCAGAGGATTTCGACCTGTTAGAGCGGGACGATGTGATGATCATCCAAACCGACGCATTCAACGATGAAGGTTTTACCAATAGCGAAGAGGAGAATCGGGTCGAGCAACCGAAATTGTTGAAAAGGAATGCTTCCAGGGAACAAAGTATCGTTTGTTCCGAATGTGGGAAATTGGTTAGGTACAAACATTATGACAAGCATACCAAGTCTCATACGTATAAGTGCCAACAGTGTCCCGAGACTTTTGGGACTCAAAGGGCGTACGAAGCACACATAAAGGTCCATAGCAATAATTCTTTTACGTGTTCCATTTGTAGTATAGATTTTGGGAGCGCCGAGGCATTTTCTATCCATAACCAGAAGCATTCCGGCTTCTTCAAATGTCCCTTATGCCCGTTCGAGACCGGTACAAAGACTTCCATGAAACCTCATATCAAGCTAATGCATATGAAAGAGTACAAAAGGGTGTGCGAGATCTGCGGGAAAGGCTTCCTAAATAACGCTACGTACACCGACCATATGACCCTCCATTCAGGcgagaaaaaatacaaatgtgaATACTGTGATAAGAAATTCGTCCTTAACAGATACTTGGATATCCATAAGAAGTTGAACCATAAAGACATCATAAACGGCGTCGAAGAATACTATTCTTGTCACGTTTGTAATCGGGCCTTCAAGTTCGAGAAAAGCCTCATCAGGCACCTAAGCTGCATCCACGACATTGGCGTAAGCAAAAGAGTGCCCTGCCCCATCTGCAGCAAGATTCTCGCTAACAATTACGGCCTGAAGATTCATATGAGGACGCATAGCGGGGAGAAGCCTTACAGTTGCGAATTATGTGACGCGAAATTTGCTAGGACGAAGTATCTTCAAAAGCATATGGCCaaacatgTCAggataatagaaaaatacagtTACACAAATACGATGTTTTCTGAATCAAACTCTATTCTTGCCAAAAGCGATGTGAACCTGACTTTGGCTAATACCACTTGCAGAGCCACAAATGCCGTAATGATTAGATTTTGCTATTTAACTTGTAAACCTCAACCTCCTACAAAATATTCgtaCGAACTAAAGTACTCGGATATCATGTCAAAGGTTAAGGTAGAGCTAAACGATAGGATATCGTCTAAGGGCAGGCCGTTCAAGAGCAAAACGAAATCCAACTATCCCGATAAGAAGTGGCCGTGCAAGAAGTGCAGCGAACGTTTCTCGACGGTCCGCCAGTTGAGGAAGCACCGGAAAGAGACGCATCGAAGGAACGTCAATATTAACCGCTATAATTTCTCCTACAATCAGCCGGAGGGCATCTATTCCTGCAATAATTGCGCGAAGAAGTCGAAGTGCCAAAAAGAAATGGAGGATCACGTCCAAACCCATGAGCCGTACGTGTGTTCGATCTGCGATTGCGAATTCTATTCCCTGTACAAATTCTCTGTGCATAATCAAAGTCACGATTCCACGCATTTCAAATGCCCCCTGTGCGATTACCAAACGGCGAGGAAGACGGCGATTTTGCGACATATAAACACGAAccacttaaataaatatatttacaattgcaaTATCTGCGGTAAAGGCTTCGAAGACGCTGCGAACTTTAGAGACCATCAAAACGGCCACGCTGGGGCGAAAGCCTTTTCGTGCATAGTTTGCCAGAAAGAGTTCCCGTTTAACAGATACCTTCTAGCGCATCAAAAGAGGAATCACATGGTCACAATCGACGGGGTCCTCTTACCAAACCAATGCGGCGTTTGCAAGAGAATCCTATCAAAACCTTCAAATTTAGAGAAGCATATGATACAGCATGACGCGGCTTTCCTTCAAGCGACGCATCACCTTTGCGACATCTGCGGGAAGGGTTTCGCTAGGAAAGATAAGCTACGTCTCCATTACAGGATGCATACCGGAATAAAACCATATAAATGCAATTATTGCACGAAATCTTTCGCGAAACGAGAGTACTTGATAATGCACGAACGTATCCATAGCGGCGAGAAACCTTTCGTCTGCCAATACTGCGGGAAGGCCTTCAATCAGAGGACTTCCTTAAAGACGCATATACGCGGTCACACCGGTGAGAGACCTTACGTCTGTCACATCTGCAAGACCGGCTTCATCTCGAAGAATTCacttaatttgcattttaaagcTTGCAATGGctaa
- Protein Sequence
- MSQIIRLINLIFRLTFKNFGQLAVFVIEDETSDHEEDVNLNPFQSEDFDLLERDDVMIIQTDAFNDEGFTNSEEENRVEQPKLLKRNASREQSIVCSECGKLVRYKHYDKHTKSHTYKCQQCPETFGTQRAYEAHIKVHSNNSFTCSICSIDFGSAEAFSIHNQKHSGFFKCPLCPFETGTKTSMKPHIKLMHMKEYKRVCEICGKGFLNNATYTDHMTLHSGEKKYKCEYCDKKFVLNRYLDIHKKLNHKDIINGVEEYYSCHVCNRAFKFEKSLIRHLSCIHDIGVSKRVPCPICSKILANNYGLKIHMRTHSGEKPYSCELCDAKFARTKYLQKHMAKHVRIIEKYSYTNTMFSESNSILAKSDVNLTLANTTCRATNAVMIRFCYLTCKPQPPTKYSYELKYSDIMSKVKVELNDRISSKGRPFKSKTKSNYPDKKWPCKKCSERFSTVRQLRKHRKETHRRNVNINRYNFSYNQPEGIYSCNNCAKKSKCQKEMEDHVQTHEPYVCSICDCEFYSLYKFSVHNQSHDSTHFKCPLCDYQTARKTAILRHINTNHLNKYIYNCNICGKGFEDAANFRDHQNGHAGAKAFSCIVCQKEFPFNRYLLAHQKRNHMVTIDGVLLPNQCGVCKRILSKPSNLEKHMIQHDAAFLQATHHLCDICGKGFARKDKLRLHYRMHTGIKPYKCNYCTKSFAKREYLIMHERIHSGEKPFVCQYCGKAFNQRTSLKTHIRGHTGERPYVCHICKTGFISKNSLNLHFKACNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00626379;
- 90% Identity
- -
- 80% Identity
- -