Basic Information

Gene Symbol
stc
Assembly
GCA_030765055.1
Location
CM060958.1:26244181-26304280[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 2 9.5e+04 -4.5 1.6 15 19 428 432 427 432 0.81
2 13 0.095 4.5e+03 0.1 0.4 4 10 461 467 460 467 0.95
3 13 1.1e-06 0.051 15.9 13.4 3 18 479 494 478 495 0.92
4 13 3.6e-06 0.17 14.3 14.6 1 18 531 548 531 549 0.97
5 13 1.2e-05 0.57 12.6 17.0 1 19 589 607 589 607 0.95
6 13 1.2e-08 0.0006 22.1 15.9 4 19 656 671 649 671 0.87
7 13 0.00066 32 7.0 8.4 1 11 711 721 711 722 0.97
8 13 2 9.5e+04 -4.3 0.9 4 10 726 732 726 732 0.86
9 13 7.5e-09 0.00036 22.8 16.7 1 19 738 756 738 756 0.98
10 13 2 9.5e+04 -4.5 1.3 6 10 785 789 784 789 0.83
11 13 2 9.5e+04 -8.4 12.7 10 19 803 813 792 813 0.69
12 13 8.9e-07 0.043 16.2 13.8 1 16 849 864 849 875 0.88
13 13 4.5e-07 0.021 17.1 15.4 1 19 881 900 881 900 0.97

Sequence Information

Coding Sequence
ATGGCAAATTGGAACAGTGCCTATTACGGAAATAGGGATAGTCAGAATTATAACTACGTTCCTCCATTGGTGGCTGGGAATGATTCTACAGGTGAATCAGCATCAAATTGGAGTTATTATCCCGTTCCTGGGGTACCCCTCTTAAACGTGCATCCTTTTCCGAGTCCTCCCTCCCAAGAATGCGTTGCGGCAGCACCGATAGTTACCCGTCAGGGAACAGATTTGACGTGGGGATATCGGAATGGCACCGATCCAGCCGCTTATGGACCTAGTGAGGCTAGTTTGGCCATAGCTGCGGCTTCTTCATTGACGCCAACAGCAGGCGAATTTGTTCCCAGAAAGACATTTGCCCAGACAGGAGAACATTCCCAAAGAACTTTGCAGAGTAATGACAATAAAGCACCACCTGTAGAGCACAGGTTTACTAATTCAAGACAAAGCAGGGACTGGAACAATCAGGGAAACAGAAGACAAAATGGCAGTGATTTCAAGCGGCCTAATTTACGCAATACATATGGACATAACCGGGAAAGTACTAGTAATGGACGTAAGGGAGGTGGTTGGTCTGGGACTTCAAATTCCAAGTATCCATCTATGGAGGATATTAAAAGCCAGGATCGTCAGAGATTGCTTGCAGAAGCTGCAGCATTTTTGTCCCCATCAGCTAATAATACTTCAAGTATAGTTGCTCGTGAACctattgaaaatggagaaatgaaGTTCACTAATACTAGAGGTTCTACTGTGACACGCCCTAGAGGACAAGAGCAGCAAAGTCATCCACGAGCTCAGGAATACAACAGGATATTTACAAACTCTGGAAGATATAATAGTAGCAATGCTTCTTCTAAGAGTACTTCCATCCAAGAGTCTGAAGGAGCAAATTATTCCAAGAGATGGAGCTCTGATAATTTTTATAAGAATCAGGGTCAAAGGAGCAGTTCCAGTGACCATCAGCGAGGTAATGCAAATGAATATCATCAACGGGGTAATGCAAATGAACATTATCAGCGCAACAGTGCAAATGATCAACAGGGCAATGCAAATGACCAGCGAAGCAGTGCAAATGAGTATCATCAACGGACCAGCGGAAATGAACATTATCAAAGGGGTGGTGCAATGGATTATATTTCAGCAAGAAATACTAATAACATAGATGGTAAACATTTTCGTTCTTCAGCAATAAGGTATCCAGCTAATTGTGCACCTCATCGTGCATCACCTAAAAGAGATTTACAAAAGTATGGCAGCAGCAACAATACATTAGAATCTGGATGGCGCTGTCCAGCATGTCAGAATGTGACCCAAGAGATTCCACAAGAGTATCGCTGCTTCTGTGGAAAGGCGCTGGATCCTGAGTGGAATCGCAATGATGCAGCTCATTCATGTGGTGAGGTCTGTGGACGTTCAAGGAGTGACAAGAGACCTGACTGTACACATCGCTGCACGTTACTTTGTCACCCAGGACCATGCCCCACTTGTGCTGCTCAGGTCACTCGgaGCTGTGGATGCGGCAAGTTACAGAAGGTAGTGAAATGTGGATCCGATCAAGCTCTTCTGTGTGGCGAGGAGTGTGGCAAGGAGCTAAATTGTGGTTTACATCACTGTACCAAAACCTGTCACGTTGGTGAATGTTCAAACTGTGAACACATGGTGAAGTTAGTGTGTTACTGTGGCAAGGAGCAAAAAGAAGTTGCATGCACCAAAGAAACAGCACATATGAAACATTTCTCATGTGAAGGCAAATGTGAGCGACCTTTGGCCTGTAATAACCATAAGTGTGAGCAGGGATGTCATCCTGGGCCGTGCACTGAATGTCAGCTGACACCAGACAAGGTGACACATTGTCCATGTGGCAAGACTGCCCTTACAGAGGATCAGGCCAGGTCCAGCTGCAAAGATCCTATACCAACATGTTCACTTATTTGTGGCAAGAAGCTTTCATGTGGACAGCCAGCTTCACCCCATACATGTGAGCAGTTGTGTCACACAGGACCTTGCCCACCATGTCCTCGGTCAACAATGGTAAGATGTAGGTGTGGCAACATGGATCGTGAGATACCTTGTGTTGAACTAACCACAAAAGCAGATGATGCCAGATGTGAGAAAAGGTGCACAAAGAAAAGGTCATGTGGCAAACACAAATGCAATCAGCTGTGCTGTATTGATGTGGACCATGTTTGTCCCCTTGTGTGTAATCATCAATTGAGTTGTGGTCAACATCGCTGCGAGGAACCTTGTCATAGGGGGCATTGCCGCCCATGTTGGCACACTAgtTTTGAAGAGCTGTACTGTGAGTGTGGTGCCAGTGTAATAATGCCCCCGGTGCCATGTGGAACACGACGTCCTGAGTGCTCTAAGCCATGCACTCGTCCACATTCCTGTGAACATCCAGCATTGCATAACTGCCACAGTGAACCACAATGTCCACCTTGCACTGTACTCACTCAGAAGTGGTGCTATGGAAAGCATGAGCTGAGGAAGAGTGTGCCTTGTTACATGACAGAACTGTCATGTGGGTTGCCATGTAATGTACCCTTGTCATGTGGACGACACAAGTGCATACTTCCTTGTCACAAGGGGCCATGCCTGAAGGAAGGCCAAATCTGTACACAGCCATGTACTGTGCCAAGACCGTTGTGTGGTCACAACTGCGCTGCTCCCTGCCATGAGGGACCTTGTCCAGACACTCCATGCAAAGTAACTGTTAAGGTAACCTGTGAATGTGGACATCGTTCAGCAAGCAGGGCATGCTCAGACAATGCAAAGGAGTACCAGCGTGTAGCAACTTCACTACTGGCCTCAAAAATGGCTGACATGCAACTTGGTCATTCCGTAGACATAGGTGATGTTCTGGGCAATCCCTCAGCTAggaaaatggctctgaaaacATTGGAATGCACAGAGGAATGCCGTGTCATTGAAAGAAATCGCCGTCTGGCAATTGGTTTACAGATTGTGAATCCTGATTTGAGTGCCAAGCTGACACCACGTTACTCTGAATTTATGCGGCAATGGGCCAAGAAAGATCCCAACTTCTGTAACATGGTTTATGAGAAACTTTGTGAACTAGTGCAGTTGGCAAAACAGTCGAAGCAAAAAAGTCGCAGTTACTCCTTTGACTCAATGAATCGGGACAAGCGGCACTTTGTGCACGAATATTGTGAGCATTTTGGATGTGAATCAGTTGCTTATGATCAGGAGCCCAAACGAAATGTTGTAGCAACTGCATATAAAGACAAGTCATCACAGCCACCACCCATatctgcagcagcagcagtagcaaggCCAGCCCCAAGTGCTTCCACTTCTACACCTACACCTGCAGGAGACTTAACCTCCCATCCTCCGTACCTCCCAGCCTCCAAACCTGCGAACCTTCCAGCTTCCGAAACTCCAAATATCCGAATCTTCCACACTACCAACCTCCGAAACTCCGAACCTGAGAACCTCCGAACCTCCCAACATTCGAACTTCCAAACCTCCAATCCTCCCCACTTCCGATTCACCATACCTCCGAACCCCCAACATCCGAAACTACGTACCTCCCGAACTCCGAACCTCCGACACTCGCAACCTCGGAACCTCGGAATCTCCACACTACCAACCTCCGAAACTCCGAACCTGAGAACCTCCGAACCTCCCAACATTCGAACTTCCAAACCTCCCATCCTCCCCACTTCCGATTCACCATACCTCCGAACCCCCAACATTCGAAACTCCGAACCTCCCGACCTCCGAAACCTCCGAGTTTCCGACCTCCGTTGTGCCAACCTCCGAATCTCCCAAACTACAAAACCTCCAACCCTCCCAACCTCCGAACCTGCCAGCCTCCTAACCTTCCTACCACCGAACCTTCTAACATATGAAACTCCAAAAATCGCAACCTCCGAAACCTCCGAGTCTCCCAACCTACTAAACTCTCAACCTCCGAGCCTCCCAAGCTCACAACCCTCGGAACTCCCAACCTCCAAGCCTCCCAACCTCCAAGCCTCCCAACCTCCGAAACCTCCAAGCCTCCCAAACTCCGAACCTACCACCcttcccacctacctacctaccaccGATCCTTCCAACACCCAAACTCCGAACGCCACAACCTCCCAAACTCAAAACCTCCGAACCTACCAAGCTCCGAAACCCCTAACCTACGAACCTCCCAGCCTCGGAAACTGCGAACCTCCCAATTTCTTAACCGCCGAACCTAGGAACCTCCGAAATATCCAAGCCTCCCAACCTCGAAACCTCCAAACCTACGAAGCTCCCAAATTCCGAATCTCCGAACTTTGA
Protein Sequence
MANWNSAYYGNRDSQNYNYVPPLVAGNDSTGESASNWSYYPVPGVPLLNVHPFPSPPSQECVAAAPIVTRQGTDLTWGYRNGTDPAAYGPSEASLAIAAASSLTPTAGEFVPRKTFAQTGEHSQRTLQSNDNKAPPVEHRFTNSRQSRDWNNQGNRRQNGSDFKRPNLRNTYGHNRESTSNGRKGGGWSGTSNSKYPSMEDIKSQDRQRLLAEAAAFLSPSANNTSSIVAREPIENGEMKFTNTRGSTVTRPRGQEQQSHPRAQEYNRIFTNSGRYNSSNASSKSTSIQESEGANYSKRWSSDNFYKNQGQRSSSSDHQRGNANEYHQRGNANEHYQRNSANDQQGNANDQRSSANEYHQRTSGNEHYQRGGAMDYISARNTNNIDGKHFRSSAIRYPANCAPHRASPKRDLQKYGSSNNTLESGWRCPACQNVTQEIPQEYRCFCGKALDPEWNRNDAAHSCGEVCGRSRSDKRPDCTHRCTLLCHPGPCPTCAAQVTRSCGCGKLQKVVKCGSDQALLCGEECGKELNCGLHHCTKTCHVGECSNCEHMVKLVCYCGKEQKEVACTKETAHMKHFSCEGKCERPLACNNHKCEQGCHPGPCTECQLTPDKVTHCPCGKTALTEDQARSSCKDPIPTCSLICGKKLSCGQPASPHTCEQLCHTGPCPPCPRSTMVRCRCGNMDREIPCVELTTKADDARCEKRCTKKRSCGKHKCNQLCCIDVDHVCPLVCNHQLSCGQHRCEEPCHRGHCRPCWHTSFEELYCECGASVIMPPVPCGTRRPECSKPCTRPHSCEHPALHNCHSEPQCPPCTVLTQKWCYGKHELRKSVPCYMTELSCGLPCNVPLSCGRHKCILPCHKGPCLKEGQICTQPCTVPRPLCGHNCAAPCHEGPCPDTPCKVTVKVTCECGHRSASRACSDNAKEYQRVATSLLASKMADMQLGHSVDIGDVLGNPSARKMALKTLECTEECRVIERNRRLAIGLQIVNPDLSAKLTPRYSEFMRQWAKKDPNFCNMVYEKLCELVQLAKQSKQKSRSYSFDSMNRDKRHFVHEYCEHFGCESVAYDQEPKRNVVATAYKDKSSQPPPISAAAAVARPAPSASTSTPTPAGDLTSHPPYLPASKPANLPASETPNIRIFHTTNLRNSEPENLRTSQHSNFQTSNPPHFRFTIPPNPQHPKLRTSRTPNLRHSQPRNLGISTLPTSETPNLRTSEPPNIRTSKPPILPTSDSPYLRTPNIRNSEPPDLRNLRVSDLRCANLRISQTTKPPTLPTSEPASLLTFLPPNLLTYETPKIATSETSESPNLLNSQPPSLPSSQPSELPTSKPPNLQASQPPKPPSLPNSEPTTLPTYLPTTDPSNTQTPNATTSQTQNLRTYQAPKPLTYEPPSLGNCEPPNFLTAEPRNLRNIQASQPRNLQTYEAPKFRISEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-