Basic Information

Gene Symbol
L
Assembly
GCA_030765055.1
Location
CM060953.1:169348106-169371891[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 1.8 8.1e+02 3.1 1.0 14 23 78 87 73 87 0.90
2 25 1.7e-05 0.0076 18.9 0.2 1 23 93 115 93 115 0.98
3 25 0.00015 0.068 16.0 0.3 1 23 141 164 141 164 0.98
4 25 3.4 1.5e+03 2.3 0.1 3 23 195 217 193 217 0.81
5 25 0.011 4.8 10.1 0.6 1 23 272 295 272 295 0.90
6 25 0.13 59 6.7 0.1 3 23 303 324 301 324 0.89
7 25 0.35 1.5e+02 5.4 0.3 3 23 382 402 381 402 0.98
8 25 0.00058 0.26 14.1 0.4 3 23 437 457 437 457 0.98
9 25 0.013 5.9 9.8 0.2 3 23 467 488 465 488 0.93
10 25 0.72 3.2e+02 4.4 0.3 1 23 493 516 493 516 0.92
11 25 4.9 2.2e+03 1.8 2.0 1 23 572 594 572 594 0.88
12 25 0.012 5.2 10.0 5.3 1 23 598 620 598 621 0.95
13 25 0.31 1.4e+02 5.5 1.8 3 23 683 705 682 706 0.92
14 25 0.0029 1.3 11.9 4.6 2 23 724 745 723 745 0.96
15 25 0.054 24 7.9 0.5 1 23 755 777 755 777 0.97
16 25 0.4 1.8e+02 5.2 0.1 3 23 786 806 785 806 0.97
17 25 0.00087 0.39 13.6 0.0 1 23 927 950 927 950 0.91
18 25 0.31 1.4e+02 5.5 0.2 1 23 954 976 954 976 0.96
19 25 0.29 1.3e+02 5.6 0.9 1 23 984 1006 984 1006 0.96
20 25 0.0054 2.4 11.1 0.1 1 23 1014 1036 1014 1036 0.97
21 25 0.57 2.5e+02 4.7 1.7 1 23 1043 1065 1043 1065 0.96
22 25 0.00058 0.26 14.1 3.3 2 23 1130 1151 1129 1152 0.94
23 25 2.2e-05 0.0097 18.6 3.0 1 23 1164 1186 1164 1187 0.95
24 25 0.12 55 6.8 0.0 3 23 1201 1222 1199 1222 0.95
25 25 1.6e-05 0.0071 19.0 2.3 1 23 1223 1246 1223 1246 0.96

Sequence Information

Coding Sequence
ATGGGCAGGACGAAGGAAACGCAAGCCGAGCATGGGAGAGTTGACAAAATGACAGGCAGGAAGACAAACGAGGCCCGTCACGGTGAGGTGTTGCTTTCTCCTGACTGTCACTTGTTTACATCCGCAGGTCACCAGAGATCGCATCCCACATGTGCATCTTGTTTCTCAATCTCTCAAACAAATGAGCTGAGGAATTCTTCGCTGGAAAAAGATCCATCACTAAACAAAGATGACCACCTGAAGATCCATATGAAGACACATGACAACCAAAAGCCGTTCCAATGCACAGTGTGTAACAGGGGCTACAACACCGCGGCAGCCCTCACGTCGCACATGCAGAACCACAAAAAGGATCAGAATGGGCAGCACAGCAATGGGGGTTCCAGCAACAACACTCCCAGTCCAGGAAACGCTTCTTCATTCCGATGTTTACAATGTGGCGACTCGTTCCGCAAACCTGAGGAGCTTCAGGGTCATATGATGACGCAACACCGCGTGGAAACCGGGGGCGGTGGTGGAAGCAGAGGTCTTCTTGGAGGACTCATGCTGGGAGAGCCACCTTTCCCGACCCCCAAGTTGGCTTGTATGTACTGCACCAAGGATAGCTTCACCACTCTGGAAGCTCTACAACTACATGTTCAGGCCATGCATGGTTCTATACTGAATGGCGATATGCGGGAGTACCCTGGAGGCGGAGTGAGCCCAAGTCTGCCGCCCCATCACCTCCTGGCAGCCGCCTCCACAGCCTCTCCCAGCCCGAGCAGCACGGCGGCTCCTACGAGCACGGTGACATCCTCAGCCAGTTCTGTACCCTACTCTTGCGACCTGTGCACCATGCGCTTCTCTTCCCTTCCTGCCCTTCATAAACACTCTCTGGCAGTCCATGGGGGTGGTGCTGCTCTGTTTTGTTCTCAGTGCTCCCTCACCTTCCCTTCACCTGCTCTCTTCGCCGAACATTACGTCCTGATGCACGAGCAGGTGAAGCCCACGGATCTCAGCAAGAAGTCCTCTTCGCCGTCGTCCTCCAGGTCTCACGACTCCAGGTCGCCGCCCAAGAGGCATAAGTTGGATCCCAGTCTGCAGCAGCCTGAGACGCCGACATCGCTGGGAGTCATGCCGTATGAGCACCCTGGTACACTGCTGTGCAATCAGTGCAGCGCCGCCCTACCAGACTTCGAATCCTTCCGCACGCATCTCAAGTCGCATCTGGAGGAAGCGAAcgctggtgctggtggtggtctGAGAGGTCTCTTGGGAGGTAGCGGGGACCCAAACGTCGGTAAAGCTACCAGTCCCGGAACAGCAGGATGTCCGCATTGTGGTGCCAAGTTCGAGGACCACACTGCCCTGGAGGCTCACATTGTATCTCACTTCATGGCCACCGCTACTGAGTACGGTTGTCAGAGCTGCCTCAAGCTCTTCTCGAAGCCAGACGAGCTACAGAAACATCTCATGGACATCCACGCGCATCACCTGTATCGTTGTTCTCTCTGCAAGGATATGTTCGACTCCAAGGTCGCCATCCAGGTGCATTTCGCCGTGAAACACAGCAATGAGTGCAAGTTGTTCCGGTGTACAGCATGTCCAGGACCTGCCGCCGTGTTTCGTTCAGAGCTGGACTTTGGACTGCACGTTCGCTCCACGCATGCGCCACCTCCACCGCCACCTCCGCTAAAGGCGCCTCCGCAGCCACCTCCACCCCAGCCGCAGCCCCATCGCTGTCTCTTCTGTCGTCTCAGCTTTTCCACGGAGCTCGAAATGCAGTTTCATCTCTCTGTCCACTCCAAACAATTCCACTGTCCGCTGTGTCAGGAATCCTTCCACGTTGAGTTCCTGCTGGACAAACACATGCAGACTCACCACAGCTCTCAGGTGTTGAACGGCAGTAGTGGGGAGCAACCGCCGCAgccacaacagcaacaacaaccacCACAGCAACAGCAACAGAAGTCGCCCAAGAGCAAGAGTGCGCCAGCTCCACCTACTCCATGTTCTACTCCCACATCCAACCCTGGAAGCGTTAAGAAGTCTGATAGCGGCGGATGTTGCGACATCTGTGAACGACGAGATTTCTCCAGCGAGGCAGAACTCCAGGCGCATCGCAAATTGGCGCACCACGTCCCCAAACCTAGTAAGGGTGGCAGTGGACAGGGTTCAGCTGTCAGTCTACATTGTGCTTACTGCTCCGAGAACTGCAAGTCTAGAACAGAGCTGGAGAATCACATGAAGACACATTCTCAGGGTGGCAGCGGCTCGGGCAAACACAAATGCAATATCTGCGACGAGCTGTGTCCCTCAGCTGCAGTTCTGGCAGAACACAAGTTGACGCACTGCAAGGTGGTGGCTGGTAGTGCGTGCACTCAGTGCAAGGCTGCTCTTCCCAGCGAGGAACAGTTCTTTGCCCACTTACAGCAACACGGGGGTGGCAGTGGTGGCGGCAGCAGCGGTTCACAAGTGGCCCTGCCAACGCCTTGCGTCATCTGTCGCCAGACGCTCATCTCGGATATTGAAGTGCGAATGCACGCGCGGTTCCACCTCAAGAACTGCgcacagcagcaacagcaacagcagcactCCTCCGAGCCACCGCTGTACCAGTGTTGTCTCTGCCTCAAGCAGCACGATCTCAGCAACTTGATACCTGCTGGTGGTAGCAACGGAGTCGTGCCGAGCTCTACGACGTACGTCTGCAAGGACTGCTATCACTGTCACAGTGGGGGAGCAGCAGTACCTCCAAACTCGTCTTCCTCATCGCCTGCGCTGCACGATCAGCAAGCTTTTCGCTGTACTGACTGCCAGGTCAAGTTCGAGACTGCGGCCGCTCTCGAAGCACATCTGGTGGCCGTGCACAGAAAAACCTTCCAGTGCATCAAATGCCAGGTGAGTTTCGAGACTGAGCGGGAGATCCAGATGCACGTGGCGACGCATTTACTGACGGAGGGAAGCAGTCACGAGTGCCACCTGTGTAGACGCCTACTAGCGACGCCGCTGAAGCTACAGGCCCATCTGATCGAGCACACGTTCGCCGGATGTGGCAGCTTCACGTGCTATCTCTGTAGCGCGGTGTTCACGGCAGCCCAGGGTCTACAGCAGCACATGCTGGAACATGGTCTTGCAGCCCGGCCCTACGACTGCTCCAGGTGTAGCCTGAGGTTCTTCTTCCGAGCCGAGCTGGACAATCATAGCTACACGCATCTGGAGGAGGATGCTGCTGCAGCTAGCCATCTGCTGGATGGAGCAGAAATGGCTGCCAAGGCTGCATATTATCATCATATGAGCACAAATGGAGGTACCCCAGAAATGCAGTACTACAAAACTTTGGCTCAGGAATCATCCAAGATGCAGAAACACAAAAGTGGTAAAAGCAAGTCTCCATCTTCCATGTTAAAATGTTTGGAATGTAACAAGGAGTTCAGCAGCATGATGGGTTTGCAAGCTCATCAGCGTCACCATCACAAGAGTAGTGGAAAGTcaaagcagcagcaacagcataCTTGTACAGAATGTGGCAAGGAATTTGGTTTGTTGCGCAATTTGAGCATACACATGCGaacccaccatcaccatcacaatGGTGACATGGAGGAACAGCAACAGATCTGTCCCGTCTGCAGGAAAGAACTGCCTGATATTGAAGCATTAGAATCTCACGTGATGTCACAACATTTCCGGTGTCCGCAGTGTAATGAAGTGTTTTCACGACAGCGTCACTTGTCAGAACACACTAGCAAAGTGCATGGTGTGCCAGAAGTTAAACAAGAGCCTATTGAAGTGAAAGAAGAACAGATAGAGGAAgatgaagaggaggaagaagatgagCATATAAATGTGTCGGATGTTGTGCCTCCTGATGATGCTCCAGTAACTTCTTCCCCCCAGCAACACTCTCCAGCAAATGCAACAGCTGAAGACGAAAGAGGTGGTACTCCAGGAGAAGATGATAGGTCAAGTCCAGAAACTTGTTTGTCTCCGGCAGAAAAGTCTTCTGGTCACTAA
Protein Sequence
MGRTKETQAEHGRVDKMTGRKTNEARHGEVLLSPDCHLFTSAGHQRSHPTCASCFSISQTNELRNSSLEKDPSLNKDDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKDQNGQHSNGGSSNNTPSPGNASSFRCLQCGDSFRKPEELQGHMMTQHRVETGGGGGSRGLLGGLMLGEPPFPTPKLACMYCTKDSFTTLEALQLHVQAMHGSILNGDMREYPGGGVSPSLPPHHLLAAASTASPSPSSTAAPTSTVTSSASSVPYSCDLCTMRFSSLPALHKHSLAVHGGGAALFCSQCSLTFPSPALFAEHYVLMHEQVKPTDLSKKSSSPSSSRSHDSRSPPKRHKLDPSLQQPETPTSLGVMPYEHPGTLLCNQCSAALPDFESFRTHLKSHLEEANAGAGGGLRGLLGGSGDPNVGKATSPGTAGCPHCGAKFEDHTALEAHIVSHFMATATEYGCQSCLKLFSKPDELQKHLMDIHAHHLYRCSLCKDMFDSKVAIQVHFAVKHSNECKLFRCTACPGPAAVFRSELDFGLHVRSTHAPPPPPPPLKAPPQPPPPQPQPHRCLFCRLSFSTELEMQFHLSVHSKQFHCPLCQESFHVEFLLDKHMQTHHSSQVLNGSSGEQPPQPQQQQQPPQQQQQKSPKSKSAPAPPTPCSTPTSNPGSVKKSDSGGCCDICERRDFSSEAELQAHRKLAHHVPKPSKGGSGQGSAVSLHCAYCSENCKSRTELENHMKTHSQGGSGSGKHKCNICDELCPSAAVLAEHKLTHCKVVAGSACTQCKAALPSEEQFFAHLQQHGGGSGGGSSGSQVALPTPCVICRQTLISDIEVRMHARFHLKNCAQQQQQQQHSSEPPLYQCCLCLKQHDLSNLIPAGGSNGVVPSSTTYVCKDCYHCHSGGAAVPPNSSSSSPALHDQQAFRCTDCQVKFETAAALEAHLVAVHRKTFQCIKCQVSFETEREIQMHVATHLLTEGSSHECHLCRRLLATPLKLQAHLIEHTFAGCGSFTCYLCSAVFTAAQGLQQHMLEHGLAARPYDCSRCSLRFFFRAELDNHSYTHLEEDAAAASHLLDGAEMAAKAAYYHHMSTNGGTPEMQYYKTLAQESSKMQKHKSGKSKSPSSMLKCLECNKEFSSMMGLQAHQRHHHKSSGKSKQQQQHTCTECGKEFGLLRNLSIHMRTHHHHHNGDMEEQQQICPVCRKELPDIEALESHVMSQHFRCPQCNEVFSRQRHLSEHTSKVHGVPEVKQEPIEVKEEQIEEDEEEEEDEHINVSDVVPPDDAPVTSSPQQHSPANATAEDERGGTPGEDDRSSPETCLSPAEKSSGH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

80% Identity
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