Basic Information

Gene Symbol
salm
Assembly
GCA_030765055.1
Location
CM060948.1:118113722-118178511[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 4.8 2.1e+03 1.8 0.2 1 21 80 100 80 101 0.88
2 10 4.3e-06 0.0019 20.8 0.9 1 23 440 462 440 462 0.98
3 10 8.4e-06 0.0038 19.9 2.1 1 23 468 490 468 490 0.98
4 10 0.053 24 8.0 3.8 2 23 847 868 846 868 0.98
5 10 3.7e-08 1.6e-05 27.3 0.6 1 23 874 896 874 896 0.97
6 10 5.1e-05 0.023 17.4 2.6 1 23 906 928 906 928 0.98
7 10 0.0022 0.97 12.3 2.1 2 23 1222 1243 1221 1243 0.97
8 10 3.8e-07 0.00017 24.2 1.4 1 23 1249 1271 1249 1271 0.99
9 10 1.2e-06 0.00052 22.6 4.0 3 23 1345 1365 1343 1365 0.96
10 10 9.4e-08 4.2e-05 26.1 0.9 1 23 1371 1393 1371 1393 0.98

Sequence Information

Coding Sequence
ATGATTGGCAATATAGAAGAGCTACATGAAGGTGTGCCATTTCCTGGGAGATGTGGAAAACGTATAAAGGGGAGACAGGCAGCTATTTCTGTCTGTCGAGTTGGTATCTATGCCCGTCTGCCAGACTGGCGGGCAGATGAATGTGTGTCGCGCGAAAGTTCTGCCTCCGTATCAGAGGACGAAGGAGGAGGAGTAGGTGGTGCAGCAGAAGCGGAAGGACCATCTATTACTACAGGACATATTTGTGGGATTTGTCATGTGGAGTTCCTCGATCTTTCTGAATACATCGAACACAAGAAGGAATGCTGTGGAGCGCTTCCGTCCTCCGCTgaggatgaagaggaagaagacgagGAGGGCGAAAGTGGAGAAAAGGTGCGGCGCCAAAGACAAGAtgttgaaaataataatgatagcgACCTCCAGCAGGACGACGGCGACTCACCTCCACTAACGGGATTTCCGTTTAGCCTGCCTCCAGTACCAGCGGCAGCACCAGGGCATGTGACGCTGGAAGCTTTGCAGAACACCAAAGTAGCGGTAGCACAATTTGCAGCCACCGCTATGGCCAACAATGCAGATAATGCTGCAGCGTTGCAAGAATTGGCTGTTCTTCAATCGACTCTCTTTACATTACAACACCAGCAAGTAATGCAGCTATCCTTAATACAGCAGCTCCAGCAACAGCTACAAATCACACGCTCGAAGGAGGGGAGTCCTGTTTCCCCACCGCCTCAACAGCCCACCAGTGTCCTAACTCCACAACCTCCAAAGACCTTAGCTCCGAACACGAGACCTTCGAGTCCCGTGACAGTCAAACAGGAACTTTCACCTCCACCAGCTTCACAGGCTATACCCCCCACACAATCAACATCGCTACCTCCAACACAGCAGACTACGTCCGGCAGTTCAACACCAGCATTGACTGCTGCGACGTTATCTTCACCGCCGTCATCATCGTCCTCAGCAGTAGTGACGGTATCGTCAACGTCGGTGAGTGCGAGTAAGCAACTGCCTCCAAAGACTACATCCCCAGTGCAAGCACCACCCCCACCACCTCCACCGCTATCAATGTGCTCGATTTCTTCTACTCTCGCGTCGTCCATAATTACAAATCCTGATCCACCGCCACTGAACGAACCCAATACGTTAGAAATGCTGCAGCGACGTGCTCAGGAGGTTTTGGACAATGCCAGCCAAGGACTTCTAGCAAATAATTTAGCTGACGAACTAGCCTTCAGAAAAGGCGGCGGAAAATCAGGATCCTCTCTGTCACCTTACGATTCCAAATCCGGCAGAAACGAGCCGTTTTTTAAACACCGTTGTCGCTACTGCGGAAAAGTGTTTGGGAGTGATTCGGCTCTTCAGATACATATCAGGTCGCACACCGGTGAACGTCCATTCAAGTGCAACGTTTGTGGTAGTCGCTTCACTACCAAAGGTAACCTTAAAGTTCATTTCCAGAGACACACAGCAAAGTTTCCACATATAAAAATGAATCCTAATCCTGTGCCGGAACATTTGGACAAGTATCACCCACCCTTACTTGCCCAGATAGGACAACACCAAAGTATGTCTCCTGGTGCTGGATTACCtcctcaccaccaccaccatcctcATCATCCGCCACCACCTCCTCCCGCACCACATCACTCTTCTCATCCTCATCATTCCTTTCATCCTGCTGGGAATAGTGGTTCGAGTTTTCCACCGACAGGATTACCTTTATATCGGCCTCCACCTCCACCTCATGAGCTGATGTCTCATTTGCACCAACCACCACCGGTTCCACCTCATCGACCGCCTCCTCATGAGCCACCGGCCCCTCCTCCGTCTCTTCCCAAGCCACCTCTTCTACAACATCCCGTATCATCTCTGTTTGGAACTCAGGAAGTACCCGAAAATCTCAGTAAACCATCACATTCCCCAGATCAACGTTATAAGAAAGAACCGCCTGAAGAGAGTGAACCGGAATCCAATCGAGAGACATCTTCCCCCTCAAGAAGGTTACAAAGCCCTAAGCAGGAACCTGAAACGGATCAGGAACAAGAGGTTACAGATATGGAAATTCCTGAAATGGAGAGATATCATCCATCACCTCCGCCCTACGATGAGTGTAGCCTAGACAGTAAGTACAGCAATGAGGATATGTTGATGGGTGAACCCGAAAGTCCTTTGGACAAAAATGAGGATAGTCTACAAGAACAACCAGAAAATCTTTCCAGCAAAAGTATGCATATTACATCATCAGTGGGACAACGTTTACCTCCATCTATTCCTTTCCCGCATACTGCAGTGTCTCCACCCAGTAGCACATCTTCGGGCAGCTTAAACACACTACACACACCGGTGGGGCCCATATCATTACCCAACGATGTAGATCCAGCTAAAGACCCTGCCATTTATACTAATCTACTTCCACGACCAGGGAGCAATGATAATTCTTGGGAAAGTTTGATAGAAGTGACAAAGACATCAGAAACGTCCAAGTTACAGCAGCTAGTGGATAACATTGAACACAAGCTCACCGATCCAAATCAGTGCGTCATCTGTCATAGAGTGCTATCATGCAAGAGTGCACTTCAAATGCACTATCGGACGCACACAGGAGAAAGACCATTCAAATGCAAAATATGTGGCAGAGCTTTTACCACAAAGGGCAACCTCAAAACACACATGGGCGTCCATCGTGCTAAGCCTCCCATGCGCGTGTTACATCAGTGTCCTGTTTGTCATAAAAAGTTTACAAATGCGCTTGTCTTGCAGCAACACATTCGATTACATACAGGTGAACCAACTGATCTTACTCCCGAGCAAATCCAAGCCGCAGAAATCAAGGAGTACCCCCCTCCTACCGCCTTTCCCTTACCAAATTCAATGAGCCCATTTCTGGCAGCTGCACAAGGTTTTCCACTTCCAGGCGTTTCGCCTTTGCCTCCTCCAGGACTGCATCTTGGCTTGAAACCGGACTTTGAGGACAAGCGGGATCGAGATAAGGATAAAGTTGATTTTATGGAAGATGAGAACACGAACAGTAGTGGCGGTGGCGGTAGTAGCACACCACAGCAGCAATTACCGTCCTTCTCCACCTCTCTGGCTGCTCTTGAGAACCAGGTACGAACTATAACCACAATGGCGTCTCAACTTTCTGCATCGGGCTTAAGTCGTTCAGCCGAAGAGGACGTGGACGGCAAGAATTCTCCTGCGCAACCGATCTCGGTACAGCCGATGAACGGAGACAAATCACCAACTGTTCAGCCCATGGGAAGTCCAAGCGAATCGGAAATTCAGGCTTCACCATCGCCTCAACCTCCTGGACTTCCAACCTCTCGACCACCCTCGTCTCATCAAcatcagcaacagcagcaacaacaacaacagacagCCACAAGCCCGGCTCCTTCGGAATCAAACTCACTAGGAGCCCTGGACCTGACGCCGAGGGGAGCATCCGCTCCATGTCACAGTCCAGCTCCTCCGCCTCCACCTCCACCAGCAAGCCTATTCCCCGGCTTTGGTCTTCTTCCTCCAGCATCTATTGCTGCAGGGTCCTCGCCTCTGATGACATCAGCCCTTTCCTCACTCACCTCGTCAGTTCTCACGTCCACAGCGTTCAGCCCCATCGGACTTGCTGTTGGGCCAGCAGTGCGACCAGGGAACACAACGTGTAACATCTGCTTCAAGACTTTCGCCTGCAACTCAGCCCTGGAAATACATTATCGTAGCCACACCAAGGAGCGACCCTTCAAGTGTACAGTCTGCGACAGAGGCTTCTCCACAAAGGGAAACATGAAGCAGCATATGCTTACGCATAAGATCAGGGACATGCCATCTCACTTATTTGAGACAAGTAAGCCACCTCCACCACCAGTAACCACAGCAAATGATGAGGGAAGCAACTCTGAAGATGTACGTACCTCCTCCACAATTGAGACATCAATGAAGCCAGATCTAGGAGTAAAGAGATCTCCTCCTGAAGGGGAAGGTGTGCTGCCAATTCCAAAAAGACAACCAGGCTTGCCAAAGCATTTGTGCCATGTTTGCAATAAGAACTTCTCGTCCTCATCAGCACTGCAGATACACATGCGCACCCATACAGGGGACAAGCCCTTCAGGTGCACAATCTGTCAAAAAGCTTTCACCACTAAGGGCAATCTTAAGGTCCATATGGGAACTCACATGTGGAGCAATGGTGCATCTCGGCGGGGTCGCCGAATGTCTCTGGATCTTCCACCTATCCCAATGACACCCAAGGATTCAGAATTTCTACAGAGGAGACCAGATCTATTTTATCCTTATCTACCAGCCCCATTTCTGAATGGCATGCAACAGAAGTTGAATGAGATTTCGGTTATACAAAGTGTCAACAGTAGCAGTCCACCTGGGGGAAAATATGGCAGTTTATTAGGGTTTGGATATGGTGGACCAGAAAAGCATCTTATATCTGAACCTCCAAGGTCGCAGCCAAACTCACCTCTATCAGACAAACCTCCCTCATCTGTATCTTCACCACCACCGTTATCGCTGTCTCTTAGCAGTCATCATGGATCACCACCACTGAGGGAACCCAGTGGCGCAGAGGGCTCAGAGAGAGAACCTACAACTAGGAACGTGTGGGATATACATTATGAAAGGAAGCCAGCCAGTGGCAATAGCGAGGATCCAGTAGGCACATCACCATCTCCCCCTGGACACGTAACACCCCATCCTCCCCCAGCTACAAGAGGCGAAGGTCTAGCTGCATGA
Protein Sequence
MIGNIEELHEGVPFPGRCGKRIKGRQAAISVCRVGIYARLPDWRADECVSRESSASVSEDEGGGVGGAAEAEGPSITTGHICGICHVEFLDLSEYIEHKKECCGALPSSAEDEEEEDEEGESGEKVRRQRQDVENNNDSDLQQDDGDSPPLTGFPFSLPPVPAAAPGHVTLEALQNTKVAVAQFAATAMANNADNAAALQELAVLQSTLFTLQHQQVMQLSLIQQLQQQLQITRSKEGSPVSPPPQQPTSVLTPQPPKTLAPNTRPSSPVTVKQELSPPPASQAIPPTQSTSLPPTQQTTSGSSTPALTAATLSSPPSSSSSAVVTVSSTSVSASKQLPPKTTSPVQAPPPPPPPLSMCSISSTLASSIITNPDPPPLNEPNTLEMLQRRAQEVLDNASQGLLANNLADELAFRKGGGKSGSSLSPYDSKSGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHIKMNPNPVPEHLDKYHPPLLAQIGQHQSMSPGAGLPPHHHHHPHHPPPPPPAPHHSSHPHHSFHPAGNSGSSFPPTGLPLYRPPPPPHELMSHLHQPPPVPPHRPPPHEPPAPPPSLPKPPLLQHPVSSLFGTQEVPENLSKPSHSPDQRYKKEPPEESEPESNRETSSPSRRLQSPKQEPETDQEQEVTDMEIPEMERYHPSPPPYDECSLDSKYSNEDMLMGEPESPLDKNEDSLQEQPENLSSKSMHITSSVGQRLPPSIPFPHTAVSPPSSTSSGSLNTLHTPVGPISLPNDVDPAKDPAIYTNLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEIKEYPPPTAFPLPNSMSPFLAAAQGFPLPGVSPLPPPGLHLGLKPDFEDKRDRDKDKVDFMEDENTNSSGGGGSSTPQQQLPSFSTSLAALENQVRTITTMASQLSASGLSRSAEEDVDGKNSPAQPISVQPMNGDKSPTVQPMGSPSESEIQASPSPQPPGLPTSRPPSSHQHQQQQQQQQQTATSPAPSESNSLGALDLTPRGASAPCHSPAPPPPPPPASLFPGFGLLPPASIAAGSSPLMTSALSSLTSSVLTSTAFSPIGLAVGPAVRPGNTTCNICFKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKGNMKQHMLTHKIRDMPSHLFETSKPPPPPVTTANDEGSNSEDVRTSSTIETSMKPDLGVKRSPPEGEGVLPIPKRQPGLPKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEISVIQSVNSSSPPGGKYGSLLGFGYGGPEKHLISEPPRSQPNSPLSDKPPSSVSSPPPLSLSLSSHHGSPPLREPSGAEGSEREPTTRNVWDIHYERKPASGNSEDPVGTSPSPPGHVTPHPPPATRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01410972;
90% Identity
iTF_01410972;
80% Identity
-