Basic Information

Gene Symbol
-
Assembly
GCA_030765055.1
Location
CM060947.1:193607689-193618846[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.32 1.4e+02 5.5 0.1 1 23 84 107 84 107 0.94
2 14 1.2e-05 0.0056 19.4 0.4 2 23 132 154 131 154 0.95
3 14 0.0076 3.4 10.6 0.8 3 23 161 181 159 181 0.96
4 14 0.00024 0.11 15.3 5.1 1 23 187 209 187 209 0.98
5 14 0.002 0.88 12.4 2.0 1 23 215 237 215 237 0.97
6 14 4.5e-07 0.0002 23.9 0.2 3 23 245 265 244 265 0.99
7 14 8.6e-07 0.00038 23.0 1.0 2 23 272 293 271 293 0.96
8 14 9.3e-05 0.042 16.6 0.2 1 23 299 321 299 321 0.97
9 14 1.7e-05 0.0078 18.9 1.1 1 23 327 349 327 349 0.98
10 14 0.036 16 8.5 1.1 1 23 365 387 365 387 0.96
11 14 0.0003 0.13 15.0 0.0 1 23 394 416 394 416 0.97
12 14 2.5e-06 0.0011 21.6 1.6 1 23 422 444 422 444 0.97
13 14 1.4e-06 0.00064 22.3 1.0 1 23 450 472 450 472 0.98
14 14 7.4e-05 0.033 16.9 1.3 1 23 478 500 478 500 0.98

Sequence Information

Coding Sequence
ATGTTAACTTTCAGTGTTGTGAGCAGAAATGATAAAGCAGAAGGCAATAATAATGGTGGTGGTAATGATATTGCACAAGCATCAGAACTTCCTGAAGTTGCAGTTGTTCAAGAAGGGCAAGGAGAAGTGGAAAAGAGAGGACCAGAAATAGTAGTGAAAGCTGCATCAATTCATAATGGTGAGATGCATTTGCCTACTGAAATCAAGGTAGAGATAGATCCATGGATTGTAgagtatgaaaataaaacatatcagTGTGCACAATGTCTAGCAGAATTCCCAGAACGGAAAAAGCTTCTAATTCATGAGATTTCGGACCACATCTTtgaagagaaggaggaggaggttgGTACTGTGGCCGTGGCTGTACAGAAGGTTAATCGGGAGGTGATTTCGTGCACAGACTGTGGACAGATGTTTGGAGGCAAAAAATCCCTGCGCAAACACATCCGTGAACAACACATTCCTACAGACATCATCTGCGAGTTCTGTGGGGCCCATTATCAGTCTTACAGTAAGCTCCTGGTACATCGCCGTCTGCATACTAGTGAGACACCATTCTGCTGTGAAACTTGTGGTTCAAAGTTTCGTTTCCAAAAAGAGCTACGCATCCACAGAAGAACCCATGTGCAGAGCAGCCCTTTTATGTGCAGGGCATGTGGTAAACAGTGTCCAACACGCAATTCCCTGTGGCAGCATGAGAAGACCCATAATGGTGACCGAATCGCTCTCTGTCCACAGTGCGGTAAAGTACTCTCAAACCCACAGAGTCTGCGTGTGCATATGCGTACACACTCAAGTGATAGACCTTGTTCTTGTCCTACATGTGGGAAGAGCTTCAAAGACAATGCATCTGTGGCAAAGCACATGCTGATGCATTCTGCAAGTAAAGATTATGCTTGTGATGTATGTGGTCGGGCATTCTATAGCAAGGCTCTTGTGAAACAGCACAAGCTTTCACATTCTGGTGTTAGACCACACCGTTGTGATATTTGTGGCGCTGCTTATAATCGTCTGGGAAATTTAAATCAACATAAAAAGAAGCATCGTGGGACAGATGGGGTGAAGGAAACATTACCATCAGATTTGCCTCATGAGTGTGTTGTGTGTGGCAAGCGAATGAGGTCAGAACTTACATTGAAGTACCATCTCGCTAAGCATACAGGAGAGAAAAAGCCATTTGACTGTGAAGTGTGTGGAAAGAGATTTGTTGCTGTTGCTCCATATCGAGTACATATGCGTATTCATACTGGAGAGCGTCCTTATGAGTGTCCAACATGTTCTAAGACTTTCCGCAGTTCTTTCACTCTCAAACAGCATCAAGCTCTTCATAAAGATGAATGCCCTTATGCATGTCCTTACTGTGAGCGGAAGTTTAAACGGTTGCAGTCACTAGTAGTTCACCGCCGCACGCATACTGGAGAGAAACCTCACAGATGTCCTACATGTGCTCGTGCTTTTGCACAGAAAGGAGACATGTTGAAACACACAAAAACCCACACCCGAGAAAGAAATTCTCTGCTGAGTACCAAAGCAGAGAAACTGGGACCTATTGTTATGGAAATAGAACAGATATCAGATCTTGCACTTAGTGATTCTGAAATGACAAGTGAATTCCTAATTGACATGCCAATTGTAGAGGTGGAAACTGAAATTAATTCAGATATCAATGCAGAAATTGCTTGA
Protein Sequence
MLTFSVVSRNDKAEGNNNGGGNDIAQASELPEVAVVQEGQGEVEKRGPEIVVKAASIHNGEMHLPTEIKVEIDPWIVEYENKTYQCAQCLAEFPERKKLLIHEISDHIFEEKEEEVGTVAVAVQKVNREVISCTDCGQMFGGKKSLRKHIREQHIPTDIICEFCGAHYQSYSKLLVHRRLHTSETPFCCETCGSKFRFQKELRIHRRTHVQSSPFMCRACGKQCPTRNSLWQHEKTHNGDRIALCPQCGKVLSNPQSLRVHMRTHSSDRPCSCPTCGKSFKDNASVAKHMLMHSASKDYACDVCGRAFYSKALVKQHKLSHSGVRPHRCDICGAAYNRLGNLNQHKKKHRGTDGVKETLPSDLPHECVVCGKRMRSELTLKYHLAKHTGEKKPFDCEVCGKRFVAVAPYRVHMRIHTGERPYECPTCSKTFRSSFTLKQHQALHKDECPYACPYCERKFKRLQSLVVHRRTHTGEKPHRCPTCARAFAQKGDMLKHTKTHTRERNSLLSTKAEKLGPIVMEIEQISDLALSDSEMTSEFLIDMPIVEVETEINSDINAEIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00434998;
90% Identity
-
80% Identity
-