Mjur013192.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995209.1:2320379-2337030[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 3.2 1.5e+02 3.5 2.5 1 20 269 288 269 290 0.94 2 9 0.46 21 6.2 0.1 1 23 307 330 307 330 0.93 3 9 4.5 2.1e+02 3.1 1.9 1 23 1280 1301 1280 1301 0.94 4 9 0.0065 0.3 12.0 0.8 2 23 1390 1411 1389 1411 0.97 5 9 5.1e-07 2.4e-05 24.9 2.9 1 23 1417 1439 1417 1439 0.99 6 9 0.00042 0.02 15.7 0.2 3 23 1446 1466 1444 1466 0.96 7 9 8.3e-05 0.0038 18.0 0.4 2 21 1473 1492 1472 1493 0.93 8 9 3.6 1.7e+02 3.4 0.9 1 20 1498 1517 1498 1517 0.93 9 9 0.00019 0.0088 16.8 0.6 3 23 1530 1551 1529 1551 0.98
Sequence Information
- Coding Sequence
- ATGGAAGAAAATAGCAAGAAAAGGAGCCGAAAATCGAAGTTAGTGCCGCGGAGTTGCTCGGATTCCGATGATGAGAATATCGCAGTTATGCAGAAAGAAATTGAGGAAACATTGGTGCAAATCAGGAATAAAAACATATTGAAGAAGTTGAGCCAACCACCAGCACCCAAACCGCCGCAGCTCTCCATCAAAGTAGAAGTCGAGGAATTCAGTGAGCCGCGCGAACCTGACACTGATTTAAATATAAGAATCGATTCCATTAAAAGTCTTGCGGAACCAACCGCTCAACCCGTCCCTAGCACAAGCAAAGAGTCCCCCCTTCCCCACTTGACGTTATCAGATGAAATTATAAGACAAGAACTCGAGAAGCTATCTCGCGAAACAACTACCCAGGCTGACAAACGGATAGAAATAAACGTGAGAAATCTTATAGGAAAAAATAGGGTAGTCTCCCCATACAGCCATATCGATGAAAAATTGCAGTCTATATTACGAAAGAAATGGACGACTTGGCGCAACACGTTCCCTGCTATACGAGAACCACCCGTCCTGTACAAATGTGACAAATGCATCAAAGCCTGGTGGCATCTGTACGACTTTAGGGAACATCTCCTACACAAGCATAAAGGAAAGAAAAGCATGACGATCCAGTTGCAAACTTTCTGCCACGAATCCCACGTGATAGCGTACGAGGCCATCGGACCGGAATTGAGAAAGGAAAAGCATCGCGCCAAATCTAACTGTTGGAGATGTGGAGAAGGTGTGGACGCGCACATGGACTTGAAATGTGACAAAAGTTCTCGATACAGATGCGGTAGCTGTTTGGAGAAATTTTATACGTGTACTCTATTGTTTAACCACAAGAGCATCTGTCCGTTGTACAGAAAATCTGCTTATATACATGGGTTCGTTGAAGACTACCCGTGCACTCAATGCCCCGTAAAGCTCGGCACGGAAATGCAACTCTTGAATCATATGGTATTACGTCACAGCGTGAGGTCCGATCTTCCCACCGACTGGGTGCTGAAGCCTTGCGCCAGCTGCAACTACGCGTACGCCTCGCCAACCTTGCACGACTGTCCGGCCAAAGCGCCGGTAGTATCCTGCAAGTATTGCTTACAAAAGTTTAACACGCACACATATCATATGATGCATTTGAATTTCACGGAAGAAGAATTCCCGTGCAGGGTATGTGGTGTGCTTCTCACAAAACAGTGTATGGAGCTGCAGCATTTGATGAGGCACACCAATAACTATACAGCAATATACAAATGTATTTATTGTGTGGAACCAAATTATTTTCCTACTTTGTATTTGGTCAACAAACATAAATTCAGCATTCACAAAGGACAATTTGAAAGCAAGAACCTATTGACTTGTTATGATATAGTAGTGGTTCCAAAAAGTTTGGCTGCAACTCTACCAGGTTTTATAAATTCAGCGCATCAAAGAGAATTGGAAAGTATGAGTTCGACTGAGAAAAATTTCGCCGATGTCTGCGATGGAATTTATCACATCATCACTAAGAACGGAAAGAGACGCAAAAGTATTATAACCACAGATCAGCCTTCTAAAAGGCCATCTGTTGAAAAAAGGATGCCTAATTGTTCAAGTGAAGAGGTCATCGATATAACTCTGGCCGATAGCTCACAAGATGAGGAATTAGACGTGGAAATAATTGAAAATCCACAAGAAAAAATTGTCATTGACATCACTGTACCCGATAGCGCTCAAGAAAATGAAGTTGTCATGAGAATTCCTAAACCTCAACAGGATAATGTCACTAATAATCCTCAAGGAAATCTCAATAGTGAAAAATTGCCTGAAAATTGCCAAGAAAATGTAATCGATGATATAAAAGTGCCTCTTTATTTAGAAGATATTAACATTAACGTAAAATTACCAAATAATACAGATGCCAGTGGTGACAATAGCCAAGAACAGTGCAATGGTCACACAATAGATCGTACACAAGAAAATGGGAATAATGATGTTCCAGTACCTGGCAATAGACAAGAAGGGGTCAATCTTCACATAAATATGTCTGAATGCCTACAAAAAAGTGCAAATCCTACGGAAATGTCCACAGATATCATCAATAATATCCCACCGACTGAAATCAATCAATTCGATCAATATTTAGTGATTAAGGAAGAAATAATAGATTGTAATGACACCACTGATTTTACTCCACAAGAACCAGCAGAAATTCATGAAATAAAAACTGAGAATAGTGTGCAAGTTAAAGAAGAACCTTTAGACATAGTTCAAAAAGAAGTTGTTCTTATCAACCACAGTAACATTAATACGAATAACTTAAGTTTTAACAAAACACCAATAACACAAGCTGTTGATGATAAATTGGGAACTCACGTTGTTAACGATAAACTAGTCGTTCCTAATTTAAAAACTTGTAAAATGAATAGTAAATTAAAAAGTAAAGCTATTAACGATAAACTAGCCGTTCCTAATTTAAAAACTTGCAAAAAGAATAGTAAATTAAAAAGTAAAGCTATTAAATTAGGAGTTAAAATTGATAGTAAGAAATTGCAGAATCAAATTAATAATAAATTGCGAGCTAATATGGATTACGAAAAACTTAAAAACAATATTAATTGTAATCAATTGAGAGCTACTATTAACAATAGTGACAAATCTAAAACTAATAATAGTAAATTAAAAGCTAACATAGGCACATTGAGAGATGTTATTGAAAATGATACACTGAAAACGAATAGTGACAAATTGAAGGCTCATATAAATAAAGTGAGAAATAGTGTTGAAAATGATACGTTGGAAACTAATAGTGATGAATTAAAGGCTAGTATAGACAAACTGAGAAATAATGTTGAAAATAATGCACTAAAAACTAGTAATGACAAGTCAGAAGCTAATATCAATAAATTGAGAAATGATGTTAAAAATGATAAATTGAAAACTAATAATGATAAATTGGGTGCCACCAATGATGAATTGATAAATGAAAAATTGAGAGATGATAACATAAAGGATTTTGAAACTAAGATTGATCAATTTGTCATACAAATTAAACAAGAAGTGGATCCTACAGATATATGCGACAGTTTCGAAGTCACCGAAGAAGAAATAAATTTCCAAATCAAAGAAGAGAATCTGGATGAGTATATTGAAGATGATTTGATAATATTGGATCCGAACAATACTGTTACGATGAAATATGAGATGGATCCTATTGCTAACACACCGGGGACGTCAGAGGACGTAGATATACAGACGCTGCTGGCGCCAATACGCCCTACATTCAAAAAAGTGTATCAATGTAGAAAATGCAACTTCCGGGGCCACCACCACGAATACAAGATTCATTTAGAACAGGAGGAACATTTCGCCAAGAGGAAGAAGCTCGGCTGTCTACGCAAGACCAAGACAGAGAACTGCAGAGAAGGGCTCAAGTACTTGTGCACCAAGTGTCACAACTCATACCAGTCCATCTACAAGTACATTATACACTTCCACAAGGTAAGTGGTTACCGCCACGAATACAAGATTCATTTAGAACAGGAGGAACATTTCGCCAAGAGGAAGAAGCTCTGCTGTCTACGCAAGACCAAGACAGAGAACTGCAGAGAAGGGCTCAAGTACTTGTGCACCAAGTGTCACAGCTCATACCAGTCCATCTACAAGTACATTATACACTTCCACAAGGTGCACGAGTACGCTCCGCAGACATGCCCCAAGTGTTTCCAGCACGTCCTCACGATCCAGTCCTTCCAACACCACGTACAGACTCATATCAGGGACAATTTCGTGCACATATTCGTCATCCAGAACAAGGAAGCGTACGACGAGAAGAAAACACACCAGTGTAAGGTTTGCTCGGAGAAAGTTACTCCAAAAACCTTCTTCTCACATTGGGAGAGCCATTTGGAAATATTGAATGTGAATGACAAGCCAAAGGAAAATGTGCCATTCTCACCCTCTATGGAACATAAGCATGAATTGAAAAAGATGCTATTGCTCCTACAAGGAAAACATCCACCAGGAGGCCCGGAGGACATACCATACACCAAACTCCGGAACTGCATCAAATGTAAACGAAGATTTGACCGCAAGAACGAGTGCAAGCGCCACTTCATTGAGCATCTCCTCCTGGACGCCTATCAAGAGAAACACAAGTACGGCTATCTCAGGTGCCAAATATGCTCCGAGGACTTCCAGACAAGTGACAAATACAAAGGGCACATGCGCGAGCACGGCAGCCTGCCCATCTACAAGTGTGAGCTGTGCGACAAGACGTTCAGCGACTCCAGCAACTTCACCAAGCACAAGAAGGTGCACAACCTCTCCGTGGTCATCTGCGACATTTGCAAGAAGAAGTTCACTGCCAAGATCTACCTCGAGAAGCATATCGTGACGCATCAGCAGATGAAGCCGCTAGTGTGTAAGGAGTGTGACAAGGTGTTCTACACGGAGTCCAGCTACCGGAAACACATCAGCCGCGGCAAGACGCTCTTCAAGTGCCTTTCCTGCAACCTCTTCTTCTCCACCACCCGAGAGAAGTGGGACCACATGTGGGATGTGCACAAGGAGAGGAATGTTCAAGCGGACTGTCCGATATGCAAGAAAGCGTACCGCAAGCAACAGGACGTTAAGAATCACCTTCGCACAGAACACGGACAACCCCGCTACCGATACGTGGTGAAGCGGAAGCCACGGAAATCAAGTGCAAAAAGATCGAGGTGA
- Protein Sequence
- MEENSKKRSRKSKLVPRSCSDSDDENIAVMQKEIEETLVQIRNKNILKKLSQPPAPKPPQLSIKVEVEEFSEPREPDTDLNIRIDSIKSLAEPTAQPVPSTSKESPLPHLTLSDEIIRQELEKLSRETTTQADKRIEINVRNLIGKNRVVSPYSHIDEKLQSILRKKWTTWRNTFPAIREPPVLYKCDKCIKAWWHLYDFREHLLHKHKGKKSMTIQLQTFCHESHVIAYEAIGPELRKEKHRAKSNCWRCGEGVDAHMDLKCDKSSRYRCGSCLEKFYTCTLLFNHKSICPLYRKSAYIHGFVEDYPCTQCPVKLGTEMQLLNHMVLRHSVRSDLPTDWVLKPCASCNYAYASPTLHDCPAKAPVVSCKYCLQKFNTHTYHMMHLNFTEEEFPCRVCGVLLTKQCMELQHLMRHTNNYTAIYKCIYCVEPNYFPTLYLVNKHKFSIHKGQFESKNLLTCYDIVVVPKSLAATLPGFINSAHQRELESMSSTEKNFADVCDGIYHIITKNGKRRKSIITTDQPSKRPSVEKRMPNCSSEEVIDITLADSSQDEELDVEIIENPQEKIVIDITVPDSAQENEVVMRIPKPQQDNVTNNPQGNLNSEKLPENCQENVIDDIKVPLYLEDININVKLPNNTDASGDNSQEQCNGHTIDRTQENGNNDVPVPGNRQEGVNLHINMSECLQKSANPTEMSTDIINNIPPTEINQFDQYLVIKEEIIDCNDTTDFTPQEPAEIHEIKTENSVQVKEEPLDIVQKEVVLINHSNINTNNLSFNKTPITQAVDDKLGTHVVNDKLVVPNLKTCKMNSKLKSKAINDKLAVPNLKTCKKNSKLKSKAIKLGVKIDSKKLQNQINNKLRANMDYEKLKNNINCNQLRATINNSDKSKTNNSKLKANIGTLRDVIENDTLKTNSDKLKAHINKVRNSVENDTLETNSDELKASIDKLRNNVENNALKTSNDKSEANINKLRNDVKNDKLKTNNDKLGATNDELINEKLRDDNIKDFETKIDQFVIQIKQEVDPTDICDSFEVTEEEINFQIKEENLDEYIEDDLIILDPNNTVTMKYEMDPIANTPGTSEDVDIQTLLAPIRPTFKKVYQCRKCNFRGHHHEYKIHLEQEEHFAKRKKLGCLRKTKTENCREGLKYLCTKCHNSYQSIYKYIIHFHKVSGYRHEYKIHLEQEEHFAKRKKLCCLRKTKTENCREGLKYLCTKCHSSYQSIYKYIIHFHKVHEYAPQTCPKCFQHVLTIQSFQHHVQTHIRDNFVHIFVIQNKEAYDEKKTHQCKVCSEKVTPKTFFSHWESHLEILNVNDKPKENVPFSPSMEHKHELKKMLLLLQGKHPPGGPEDIPYTKLRNCIKCKRRFDRKNECKRHFIEHLLLDAYQEKHKYGYLRCQICSEDFQTSDKYKGHMREHGSLPIYKCELCDKTFSDSSNFTKHKKVHNLSVVICDICKKKFTAKIYLEKHIVTHQQMKPLVCKECDKVFYTESSYRKHISRGKTLFKCLSCNLFFSTTREKWDHMWDVHKERNVQADCPICKKAYRKQQDVKNHLRTEHGQPRYRYVVKRKPRKSSAKRSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -