Basic Information

Insect: Maniola jurtina
Gene Symbol: -
Assembly: GCA_905333055.1
Location: HG995233.1:2613891-2614880[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 6.1e-05 0.0028 18.4 1.1 1 23 44 66 44 66 0.98

2 8 0.38 18 6.4 0.6 2 23 135 157 135 157 0.95

3 8 0.81 38 5.4 1.8 3 21 165 183 163 184 0.88

4 8 1.8 84 4.3 0.1 2 23 193 214 193 214 0.90

5 8 0.69 32 5.6 3.8 1 23 218 241 218 241 0.93

6 8 0.00029 0.014 16.2 2.8 1 23 247 270 247 270 0.96

7 8 0.0079 0.37 11.7 0.0 2 23 277 298 277 298 0.94

8 8 0.00098 0.045 14.6 1.7 2 23 305 327 304 327 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	6.1e-05	0.0028	18.4	1.1	1	23	44	66	44	66	0.98
2	8	0.38	18	6.4	0.6	2	23	135	157	135	157	0.95
3	8	0.81	38	5.4	1.8	3	21	165	183	163	184	0.88
4	8	1.8	84	4.3	0.1	2	23	193	214	193	214	0.90
5	8	0.69	32	5.6	3.8	1	23	218	241	218	241	0.93
6	8	0.00029	0.014	16.2	2.8	1	23	247	270	247	270	0.96
7	8	0.0079	0.37	11.7	0.0	2	23	277	298	277	298	0.94
8	8	0.00098	0.045	14.6	1.7	2	23	305	327	304	327	0.95

Sequence Information

Coding Sequence: ATGGCCGTTATAAGTAAAAAGAAAGAACTAGAGGATCAGAATAAAAGAAACTTAGACATTATGCGAAAGAATATCATTGAAGTCATACAGAAGTCCACAATAATCCCTTTTAGGTGGTTGAGCAGTTGCTTCAGATGCTTTTACTGCTACGAAATGTTTGAGAAGCCACAGGACTTGAAGGCACACCAGGAAACACATAGTTTGGAAGATTTGGAGAAGAACATGAAGAATTACTGCGAACCGCTTCTCCATGTGGATGTGACAGATATTAGTTGCAAACTGTGCTATGCTAACATGGATGATGTGTTCCAACTCATCGACCATTTAATAGTTCTCCACGAAATCCCTTTTGATCGAGAAATTGGTATCAGTTTGGTGCCAATGAAACTGGACGACGGTCCCAAATGTTTTTTCTGCGCGAACGTTTTAAAAACGTTTGCATTATTACTGGCACATATGAATAAGTTCCATAAGAATTATTTCAAATCTGTCTGCATTAAATGCGGTAGGCAATTCAAGGGTTATGAAGATTTTTGTCATCACGCCAAAAACCAGGTTTTAGATGATTATCAAGAGCAATGCGGTCTGTGTGGTTTGTTCTTGAGTTACGGAGTACTGAGGGCACATATGAATGAAGAACACGGGAGAAGATACAAGTGTTTGAGCTGTTTTGAATTCTTTACAACCCATTATAAACGCTCGACTCATATGGCTGATGTGCATAACAGAAGAGATAAATTCAAATGCTCATATTGTAACAAAACGTTTATTTTCAAGAGTATCATGCGAAGGCATGTCAGAGAGAATCATTTGAAGGAGAAAAACGCGGTTTGTGAAGTATGCGGGTGGAAGGCGTTCGGAAAATATGAGTTATTAAACCATATGGCTAGGCATACGAATGTTAGGCTGATCAAGTGTTCCGCTTGCGATAAATCGTTCAAAACTGTTAGATATATGAAGAAACACTATGCTAAAAACCATGAACAGTAA
Protein Sequence: MAVISKKKELEDQNKRNLDIMRKNIIEVIQKSTIIPFRWLSSCFRCFYCYEMFEKPQDLKAHQETHSLEDLEKNMKNYCEPLLHVDVTDISCKLCYANMDDVFQLIDHLIVLHEIPFDREIGISLVPMKLDDGPKCFFCANVLKTFALLLAHMNKFHKNYFKSVCIKCGRQFKGYEDFCHHAKNQVLDDYQEQCGLCGLFLSYGVLRAHMNEEHGRRYKCLSCFEFFTTHYKRSTHMADVHNRRDKFKCSYCNKTFIFKSIMRRHVRENHLKEKNAVCEVCGWKAFGKYELLNHMARHTNVRLIKCSACDKSFKTVRYMKKHYAKNHEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01092606;
90% Identity: -
80% Identity: -