Mjur001590.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995234.1:5225056-5238380[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.7e-05 0.0045 17.7 1.5 1 23 292 314 292 314 0.99 2 12 1.2 56 4.8 0.8 2 23 322 343 321 343 0.95 3 12 0.061 2.8 8.9 0.4 1 23 347 369 347 369 0.96 4 12 0.0019 0.086 13.7 2.6 1 23 374 397 374 397 0.98 5 12 0.045 2.1 9.4 0.9 1 23 401 424 401 424 0.96 6 12 2.9 1.3e+02 3.7 0.2 5 23 507 526 504 526 0.93 7 12 0.045 2.1 9.4 0.9 1 23 615 638 615 638 0.96 8 12 0.016 0.76 10.7 0.1 3 22 651 670 650 674 0.94 9 12 0.0022 0.1 13.5 6.6 3 23 749 769 748 769 0.98 10 12 0.0015 0.071 14.0 1.3 1 23 775 797 775 797 0.98 11 12 0.00075 0.034 15.0 1.5 1 20 806 825 806 828 0.94 12 12 0.024 1.1 10.2 2.2 1 17 833 849 833 856 0.82
Sequence Information
- Coding Sequence
- ATGATATGCCTGGATACAAATTGTAAACTTTACCCACTGAGCAAGTATAACCTGGAGCAAGCGTATGAAATATTGACAGGTCTTCAATTGCAACAAACGGTGCCGTATTTGACACCGGCAGCCTGCTCGGAGTGTGCTCAGCGCCTCACCAACTGCAGCCAGTTCCGACACAAGAGTCTGAGAGCACATGTGCTGTTATTTGAGCTATTTAAACAGCACGAAGTGTTAACAGTACCAAAAATAAGAACTATAAGTCGACACGACCAAGGACTGGCGTCTAAAATAACACAAAAGTTTTTCAAACCCAACCATTGTGACCTAAATGTTGTCGACAGTTCATCCGTAGAAATAGAAATAGACAACGTAGAGACAAAATCCATAGTCAAGGTAGAAAAACAAGATGAAATAGTATTTGCTTTTGAACGTAAAGAAAACGATAGTTTTACAGAACTAGCAGTCCACGGTATCAAAAATGATTTGAATGAAGACATTGATATTGATGTAGATATTTTGAACGATGACAACAATGTAGATTTTTTGAACAATGACACTGATGATGACGGATTTTTGGATGAAAATTTGACTGCTTTGAATGATAAAGAACTAAATGTCAGTAATTTGGCAGGTGTTGGGGTTGAATCTGTTACCAAAGTTGAAACTGATAAAGGTATTAATGAGAATGTACCAAAAACAGTCGTTAATAACATTAAAAAGACAAGAAAAGTTAATCCGGTTGGAACTAAGACTGTTCGTAAGAGAACCCGGGCTGTTAAAAGAAACGTTACAAAAAAAGTTGACGAATCTAAACCTAAAAGAGCATCGAGAGCAGAAATCAACAAGAGGAAGGAATCTAGTAACTATAAGAATTCTGGTTTTCAGTGCGATGTATGCTATAAGGGGTTTATTACTGAAATTACTTATACTCGACATATGAAGAAGCATACCAAGGCGTTCGGCACGCTGGAGTGCCCGGTGTGCAAGCAGTACTGGGGCGACAAGTACGCGCTGCACAAGCACAGCAAGTCGCACGCGACGCGCTACACGTGCACGCTGTGCGGCTACACCACCATGACCAACGAGTCTGCGCGAATGCACGAAAACTGGCACAAGGGCACCCGGTACAAGTGTGACCACTGTGACGCTGAATTCATAAAGTACACGTCATACATGACGCACTTGCGTGTGAAGCACCCTTCAGACCACATCTGCAATCAGTGCGGCTACTCCTACCTGAACGAGCTGGGCCTCCGCTCGCACTTGCGCAGGATTCACCGCTTGGACAAAGTCGAGGTGAGACCTTGCCGCTACAGTACTACCACTATGCCGATGTACCTGCGCAGACAGCAAGTACACGTCATACATGACGCACTTGCGTGTGAAGCACCCTTCAGACCACATCTGCAATCAGTGCGGCTACTCCTACCTGAACGAGCTGGGCCTCCGCTCGCACTTGCGCAGGATTCACCGCTTGGACAAAGTCGAGGTGAGACCTTGCCGCTACAGTACTACCACTATGCCGATTGCGGCTACTCCTACCTGAACGAGCTGGGCCTCCGCTCGCACTTGCGCAGGATTCACCGCTTGGACAAAGTCGAGGTGAGACCTTGCCGCTACAGTACTACCACTATGCCGATGTACCTGCGCAGACAGCAAGTACACGTCATACATGACGCACTTGCGTGTGAAGCACCCTTCAGACCACATCTGCAATCAGTGCGGCTACTCCTACCTGAACGAGCTGGGCCTCCGCTCGCACTTGCGCAGGATTCACCGCTTGGACAAAGTCGAGACAGCAAGTACACGTCATACATGACGCACTTGCGTGTGAAGCACCCTTCAGACCACATCTGCAATCAGTGCGGCTACTCCTACCTGAACGAGCTGGGCCTCCGCTCGCACTTGCGCAGGATTCACCGCTTGGACAAAGTCGAGAATCCAGACGGGCCGCTGTGCGAGGAGTGCAACGTGCGCTTCGCGAGCAGTGCGGCCTACAAACAGCATCTGAAGGTTTCGCCCAAACACTTCACTCCCGAAACGCGGCGAGTCAACCAGGCGGTGCCGCCGCGCTGCTACAGCAAGGGCAGTGGTCGCCACAAGCGGAGGCGGGGAGACCCCGCTGACGTCATCACTTGCGAACAGTGTGGCATCGAACTCAAAGACTTCTTGCGGTATACATTCCACTTCAAGCGCGAGCACCCCGACAAGAACCGAACGCAGTTCTCTCCCAACAATCAGAAAGTGTTGTGTGAGCTGTGCGGAAAACACTTTCAGTCACCACACCATCTGAAATACCACATGACGAAACACACGGGCCAGAAGGACTTCCAGTGCGACGTGTGCGAGAAACGCTTCCGGATCAAGGCCTTCCTCGACAAGCACAAGGAGACGCACATGGCGATGACGGTGCGGCGCCTCTACACGTGCGCCGTGTGCGACAAGAGCTTCACTTGCCAGTCCAGCCTCAACCGACACGTGTGGATCCACAGAGGAAAGTCCTTCAAATGCGAAATCTGCGAGAAAGCGTTTAGCAACGCCTCGGAACGCAACTGCCACGTGTCTCACGTACACATGAAGGTGCCTTGGCCGAAGCGAAACCGCGGCCCCAACCGAGTCCGACGACCTTCCTTAACTAAACACGAGAACTATGACGAATGA
- Protein Sequence
- MICLDTNCKLYPLSKYNLEQAYEILTGLQLQQTVPYLTPAACSECAQRLTNCSQFRHKSLRAHVLLFELFKQHEVLTVPKIRTISRHDQGLASKITQKFFKPNHCDLNVVDSSSVEIEIDNVETKSIVKVEKQDEIVFAFERKENDSFTELAVHGIKNDLNEDIDIDVDILNDDNNVDFLNNDTDDDGFLDENLTALNDKELNVSNLAGVGVESVTKVETDKGINENVPKTVVNNIKKTRKVNPVGTKTVRKRTRAVKRNVTKKVDESKPKRASRAEINKRKESSNYKNSGFQCDVCYKGFITEITYTRHMKKHTKAFGTLECPVCKQYWGDKYALHKHSKSHATRYTCTLCGYTTMTNESARMHENWHKGTRYKCDHCDAEFIKYTSYMTHLRVKHPSDHICNQCGYSYLNELGLRSHLRRIHRLDKVEVRPCRYSTTTMPMYLRRQQVHVIHDALACEAPFRPHLQSVRLLLPERAGPPLALAQDSPLGQSRGETLPLQYYHYADCGYSYLNELGLRSHLRRIHRLDKVEVRPCRYSTTTMPMYLRRQQVHVIHDALACEAPFRPHLQSVRLLLPERAGPPLALAQDSPLGQSRDSKYTSYMTHLRVKHPSDHICNQCGYSYLNELGLRSHLRRIHRLDKVENPDGPLCEECNVRFASSAAYKQHLKVSPKHFTPETRRVNQAVPPRCYSKGSGRHKRRRGDPADVITCEQCGIELKDFLRYTFHFKREHPDKNRTQFSPNNQKVLCELCGKHFQSPHHLKYHMTKHTGQKDFQCDVCEKRFRIKAFLDKHKETHMAMTVRRLYTCAVCDKSFTCQSSLNRHVWIHRGKSFKCEICEKAFSNASERNCHVSHVHMKVPWPKRNRGPNRVRRPSLTKHENYDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -