Mjur007029.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Maniola jurtina
Gene Symbol
-
Assembly
GCA_905333055.1
Location
HG995233.1:2812670-2820034[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.0014 0.064 14.1 0.0 3 23 310 330 309 330 0.97
2 10 0.0011 0.052 14.4 1.8 1 23 335 357 335 357 0.97
3 10 0.066 3.1 8.8 0.0 5 23 395 413 394 413 0.96
4 10 0.0011 0.052 14.4 1.8 1 23 418 440 418 440 0.97
5 10 0.066 3.1 8.8 0.5 5 23 455 473 446 473 0.91
6 10 1.4 64 4.7 0.7 1 16 478 493 478 494 0.88
7 10 0.078 3.6 8.6 0.0 5 23 494 512 492 512 0.96
8 10 0.0011 0.052 14.4 1.8 1 23 517 539 517 539 0.97
9 10 0.066 3.1 8.8 0.0 5 23 577 595 576 595 0.96
10 10 0.0011 0.052 14.4 1.8 1 23 600 622 600 622 0.97

Sequence Information

Coding Sequence
ATGAGTAAATTAAAAAAAAAGAGTAAAATGAATACAAAACGCGTCCCAATGGACGTAGACGAAGAAATTAAATCGGAGTCTTGCAGAATTTGCTTAACTCCAAACAATAAAATGATTAATATATTCGCTAGAACGCTGTTAACAAAAATTGAATACTGTACCGGTATTAAGATAAAAAAAGAAGATGATCTACCTACAAAAATATGCAAAAGTTGTCAGACAAGCCTAACAGTAGCCTATAAGTTTAAAAAACTGTGTCTTCTAACGGAACAGATCTGCCAAAATTTTTTGGAAAGCAACATAAAAACTGAGCAGACCCATGACACTAGCAAAATTGTTGACAAGGAAAGTGATGAGGACTTTTTCAACGACGGTTGGCTCAAACGGGACCAGTCTAATAACAATTTTAACGGAGAGTGTTTCAAAAAAGATCATTCCAATGACAAGTTTAACGAAAGTAGTGACAAAGGAGATCATTCCAGTGATAATTTTGACGAAGAATATTTAGATGAAGATTATTTAAAAGAGAACTTAATTGGAGACCAAATTAACGATGCTGACAATGTAATAAATGATGGTAGTGATCAGAACAATGGTATAACAATTGTCAAAGAGGAGATCAAATGTGAGTATGAAGAAAGCACGGAGGATGTACCAAAGGAAATATTACAAAGTTTGGAAGGGAAGAGTAGTATTGATAGACCGAGAAGGACACCTAAACCTAGAAAATTTGAAAAGGCTATTGGAAATATTAAGAACAAGAGAAAAAAACGTGGACCATACAGAAAGAAGACGGAAGCACCAAAACGCTGGAGAAAATTCAAGTACTCAAAATTATTCTGTGAGACGTGTCAAATCAAGTTTACTTGCAAAAAAGACTCGGATGAACACAAAGAAACACTGCATAAGGAAACTTGGCCTGCTATATGCGAGGTATGCGGCAAGCTGTTCGCGAGCCTCGGCGCGTACTCCTCGCACATCCGGTACCACCTGCCGCCCTCCTTCTTCTGCGAGCACTGCGACTACCGCACCAGCTACAGGTGGGACCTGGTCAAACATCTGCTCATACACACCGGTATGCGGCAAGCTGTTCGCGAGCCTCGGCGCGTACTCCTCGCACATCCGGTACCACCTGCCGCCCTCCTTCTTCTGCGAGCACTGCGACTACCGCACCAGCTACAGGTATGCGGCAAGCTGTTCGCGAGCCTCGGCGCGTACTCCTCGCACATCCGGTACCACCTGCCGCCCTCCTTCTTCTGCGAGCACTGCGACTACCGCACCAGCTACAGGTGGGACCTGGTCAAACATCTGCTCATACACACCGGTAAGCGGTACTGTAGCTGTCTGAAGTATTCACTCCAGGTATGCGGCAAGCTGTTCGCGAGCCTCGGCGCGTACTCCTCGCACATCCGGTACCACCTGCCGCCCTCCTTCTTCTGCGAGCACTGCGACTACCGCACCAGCTACAGGTGGGACCTGGTATGCGGCAAGCTGTTCGCGAGCCTCGGCGCGTACTCCTCGCACATCCGGTACCACCTGCCGCCCTCCTTCTTCTGCGAGCACTGCGACTACCGCACCAGCTACAGGTGGGACCTGGTCAAACATCTGCTCATACACACCGGTATGCGGCAAGCTGTTCGCGAGCCTCGGCGCGTACTCCTCGCACATCCGGTACCACCTGCCGCCCTCCTTCTTCTGCGAGCACTGCGACTACCGCACCAGCTACAGGTATGCGGCAAGCTGTTCGCGAGCCTCGGCGCGTACTCCTCGCACATCCGGTACCACCTGCCGCCCTCCTTCTTCTGCGAGCACTGCGACTACCGCACCAGCTACAGGTGGGACCTGGTCAAACATCTGCTCATACACACCGGTAAGCGGTACTGTAGCTGTCTCAAGTGA
Protein Sequence
MSKLKKKSKMNTKRVPMDVDEEIKSESCRICLTPNNKMINIFARTLLTKIEYCTGIKIKKEDDLPTKICKSCQTSLTVAYKFKKLCLLTEQICQNFLESNIKTEQTHDTSKIVDKESDEDFFNDGWLKRDQSNNNFNGECFKKDHSNDKFNESSDKGDHSSDNFDEEYLDEDYLKENLIGDQINDADNVINDGSDQNNGITIVKEEIKCEYEESTEDVPKEILQSLEGKSSIDRPRRTPKPRKFEKAIGNIKNKRKKRGPYRKKTEAPKRWRKFKYSKLFCETCQIKFTCKKDSDEHKETLHKETWPAICEVCGKLFASLGAYSSHIRYHLPPSFFCEHCDYRTSYRWDLVKHLLIHTGMRQAVREPRRVLLAHPVPPAALLLLRALRLPHQLQVCGKLFASLGAYSSHIRYHLPPSFFCEHCDYRTSYRWDLVKHLLIHTGKRYCSCLKYSLQVCGKLFASLGAYSSHIRYHLPPSFFCEHCDYRTSYRWDLVCGKLFASLGAYSSHIRYHLPPSFFCEHCDYRTSYRWDLVKHLLIHTGMRQAVREPRRVLLAHPVPPAALLLLRALRLPHQLQVCGKLFASLGAYSSHIRYHLPPSFFCEHCDYRTSYRWDLVKHLLIHTGKRYCSCLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-