Mjur006645.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995233.1:1911363-1915899[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.6 3.1e+02 2.5 0.1 5 23 155 173 154 173 0.93 2 13 2.9 1.3e+02 3.7 0.2 1 19 177 195 177 196 0.91 3 13 5.7 2.6e+02 2.7 0.5 1 8 199 206 199 209 0.92 4 13 0.11 5.3 8.1 4.5 3 23 277 298 275 298 0.95 5 13 0.0065 0.3 12.0 0.4 2 23 324 345 323 345 0.96 6 13 0.0059 0.27 12.1 1.3 2 23 368 389 367 389 0.97 7 13 0.024 1.1 10.2 0.1 2 23 394 416 394 416 0.89 8 13 0.39 18 6.4 0.7 1 23 421 444 421 444 0.89 9 13 0.0016 0.073 13.9 4.3 2 23 452 474 451 474 0.96 10 13 0.0032 0.15 13.0 1.1 2 23 482 504 481 504 0.97 11 13 0.077 3.6 8.6 4.7 1 23 510 532 510 532 0.99 12 13 6.4e-06 0.0003 21.5 1.3 1 23 538 560 538 560 0.99 13 13 2.6e-05 0.0012 19.6 2.4 1 23 566 589 566 589 0.98
Sequence Information
- Coding Sequence
- ATGCTATTGTTTAAAGTCAGCAAACTTACGGTCAAAATAGGGTCTTGGACTGTAATAAGATTATGTGATGATTTGTACAGCGATTCCCAGAAAGAAGACAAGGTCATATTCAAACATCGTCATAATATTAGGACACCTATAGGAACTCAAAGCGACAAAGGCTACGGATGCTATTTCTGTGAAGACATTTGCGAAAAACCAAAAGAGCTAAAAGATCACACCATAAATTCCCATTCAGCAGACTTTGACCGAATTATGGATGGCAAAAACTTACACGATTATTTCATCAAACTTGACATAACTGAACTGCGGTGCAATATTTGCAAAGTCAAAGTGTTACATACAATGCCCAGCTTGGAGGATATGATGCCACATCTCAAAGATCACAAGGAAGAAATACATTTGGACATTAAAAATCAGATAATGCCATTTAATTTCATAGATGAAGAACTAAAGTATGCGGTATGCGAACAAGAATTCGACGAGTTCGAAACACTGGTCGAACATATGCACCTGCATTATAGGAACCACGTTTGCAAGAACTGCCCGGCAGGATACATAAATGAGAAATCTTACCTAGATCACAGCGTTGCATTCAAATGTAAAGACTGTGAAAAATTAATAAGAGAACAAGGAGTGGTGACACCAAAAATCAATTCAATATGTCCTTTCTCTACAGATCGCGGGAAGAAAGTGACGGTACAGAAGAAGAAGATATCAAACAACCCCAAGAAACGTGAAAGAAGCAAGCATATGGATAACATAACGACCCTGTTCAACCACACCAACGCCACGCCCTTGCGATGTCAGAAAGACATAGGATACGGGTGTTGCTTCTGCGACAAGTTTTGTGAGAAACCTGCCGAACTAAAACAGCACACAAGACAAACTCATCAGTCTGATATACACAAAATCATGAGAAAGAAATCGCTAAACGATTACCACGTGAAACTAGATATAACTGGCTTGCAATGCAACGAATGCAATACAAAAACAGATAATTTAGAGGACATGATGCGTCATCTTCAGGAACACAACAAAAATATACACTGGGACATAAACAATCACATAATGCCATTCAGTTTCGACGACGACGAATTACGCTGTGTCATCTGCAAAGCGGAGTTCAACAAATTCAAGAAATTAAATGAACACATGAACAAGCATTACCGAAATCGGGTTTGCGACGTGTGCGGCGCGGGTTTCATTAACGAAAGAACTTTTCGGAAACATTCAATCCAAGTCCATAAAAAAGGAGTATTCGCTTGCAAATTCTGTGAAAAAATCTTCGATACGATCGGGAAGAAGAGATCCCACGAATCGTCTGTACATATTCACTCGCAGATGTTGAACAAATGCGGGTATTGTAACAAGAAGTTTAAGTCTCACAGGAATAAAGAGAAGCATATTTCTAGTGCGCACGGCGTACGTTTAAAGGAAATCAAATGTAAATTGTGTGGTAAAGTCTGTCTGACCGCGAATGCTTTAAGAGTTCACACCAGACGTGACCATTTGAAGGAACGGAATTATCAATGTCACTTGTGTGCTTTCTCGTCTTACGGGAACAGTTGCTTGCAGAGTCACATGTTGAAACATACGGGGGTGAGGGACTTCCAATGCGACATTTGTTTGAAGTCGTACGCTAAGAAGAAGACTTTAAAGGAACATATGCGGATACATGCGGACGACAGGCGGTTTAAATGCGAGTACTGTGGTCTGGCGTTTATACAGAAGTGTAGTTTGAAGGGGCATATGCAGTCTAAACATAGAGATTTGGTGCCGTCGGTTTAG
- Protein Sequence
- MLLFKVSKLTVKIGSWTVIRLCDDLYSDSQKEDKVIFKHRHNIRTPIGTQSDKGYGCYFCEDICEKPKELKDHTINSHSADFDRIMDGKNLHDYFIKLDITELRCNICKVKVLHTMPSLEDMMPHLKDHKEEIHLDIKNQIMPFNFIDEELKYAVCEQEFDEFETLVEHMHLHYRNHVCKNCPAGYINEKSYLDHSVAFKCKDCEKLIREQGVVTPKINSICPFSTDRGKKVTVQKKKISNNPKKRERSKHMDNITTLFNHTNATPLRCQKDIGYGCCFCDKFCEKPAELKQHTRQTHQSDIHKIMRKKSLNDYHVKLDITGLQCNECNTKTDNLEDMMRHLQEHNKNIHWDINNHIMPFSFDDDELRCVICKAEFNKFKKLNEHMNKHYRNRVCDVCGAGFINERTFRKHSIQVHKKGVFACKFCEKIFDTIGKKRSHESSVHIHSQMLNKCGYCNKKFKSHRNKEKHISSAHGVRLKEIKCKLCGKVCLTANALRVHTRRDHLKERNYQCHLCAFSSYGNSCLQSHMLKHTGVRDFQCDICLKSYAKKKTLKEHMRIHADDRRFKCEYCGLAFIQKCSLKGHMQSKHRDLVPSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -