Mjur006953.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995233.1:2188509-2191461[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.9 90 4.2 0.4 2 23 30 52 29 52 0.92 2 20 0.84 39 5.4 0.7 2 23 76 97 75 97 0.95 3 20 0.0004 0.018 15.8 0.6 1 21 101 121 101 122 0.96 4 20 0.0066 0.3 12.0 0.4 1 23 163 186 163 186 0.96 5 20 0.46 21 6.2 0.4 2 23 212 234 211 234 0.95 6 20 0.01 0.47 11.4 0.8 2 23 258 279 257 279 0.95 7 20 0.00038 0.018 15.9 0.0 1 23 283 306 283 306 0.97 8 20 0.032 1.5 9.8 0.5 1 23 310 333 310 333 0.98 9 20 5.2 2.4e+02 2.9 0.3 1 23 338 363 338 363 0.89 10 20 0.17 7.8 7.5 0.2 3 23 422 443 421 443 0.95 11 20 0.18 8.2 7.5 1.0 3 23 514 534 513 534 0.98 12 20 0.43 20 6.3 0.8 1 21 538 558 538 559 0.94 13 20 3.3 1.5e+02 3.5 0.4 1 20 600 619 600 622 0.94 14 20 1.8 83 4.3 1.0 2 23 649 671 648 671 0.93 15 20 0.026 1.2 10.1 0.7 2 23 696 717 695 717 0.92 16 20 0.00011 0.0049 17.6 0.0 1 23 721 744 721 744 0.97 17 20 0.9 41 5.3 1.4 1 23 748 771 748 771 0.97 18 20 2.4 1.1e+02 3.9 0.5 1 23 776 803 776 803 0.86 19 20 0.27 12 6.9 5.3 1 22 812 833 812 835 0.87 20 20 0.014 0.64 11.0 1.2 1 23 845 868 845 868 0.95
Sequence Information
- Coding Sequence
- ATGAAAACAGACCATGTCAATACGGATTTCAAAAACGTTTTCTATAGGACGAAAGATAATTTAATCAAAGTGGACATCACCGATTTGAAATGTAACATATGTCACCAGGATATACAAGATGTGGATACTCTGATGGGTCACCTGTCTCGAGACCATAATAAGCCTGTCAGGTTCAACGCGCGATTCGGCGTTCTGCCGTACAAGCAGAACGCTATCGACCATTGGGTGTGCGTGTACTGTCAGAAGAATTATCTGGAGTTTATACAGTTCAAGCGTCATATAACCACTCATTTTATGAACTTTAGTTGCGAAAAGTGCGGTACGATGTTTATTTCGGAGCACGCGTTGCGGGATCATCGGCGACAGGTGAAATGCTTTAGGACGGCGTATAAACCTCGTAATGGGAGAGTGATGAGGCCGCGTTCCAACGCTGAAATCATCCTCCAATGCTCAACAGCTTGTCCCTTCAGGACTTGGAAGAGTAATTTCAACTGCGTTTTCTGTAGAGTACAATCTAGCGACCCTAGCACGTTGCGAGCCCATATGCTAACCAGGCACGAGAATTACGACGTACAAGCGGCGTTCTATAAAAAGTTGGGTAAAGAATTCCTCAAAATAGATATAACAGATCTTCAGTGCAAATTGTGCTTTATGCCTATTGAGAACTTCGAAAACTTGACATACCATTTGAAGAACGATCACCAGCAGCCTATTAATTCTGACGCCCAGTTAGGTGTTCTTCCGTTTAGATTGAACGATGGGTCGATTTGGAAGTGTACAATGTGCCCGAACGAGTTCAAAGATTTCATTTCACTGAAGAAGCACACATCAGAGCATTTCCAGAACTACGTTTGCGATACTTGCGGCGAAGGGTTCATTACAGAATCTGCTATGATCGCCCACACTAAGATACCTCATGAAAATAAGTATAGTTGTAGTCGATGTGTTGCGACGTTCTCGACGCTTGAAGAGCGTAATGTACACGTCAAAACGCAACACACGTCCACACCGTACATGTGCGTATACTGCAAAGACAGGCCGCGATTTGCAAACTGGGAGCTGAGGAAGAAGCATCTAATGGAAGTCCACAATTACAAAACCGGGCCCAGAACGGATAGTGACGGACTCAAAGATAAAGAAAGAAAACAAAAAATGAGGTTATTCGAAAGATCCGTTATGCAGAACCCCCTGCGACAAAACGCTGTACTCGTTCTTAGATATTCCACCGCGATACCGTTTAAGACTCGCTTCAATAGAATCCTCTGCTCCTATTGCTATATTGAGTTTGAAACTATAGAAACTTTGAGGGATCACGTGAAAGCTAAGCACGCTAAAGTGGATTACAATAGCGCCTTCTACAAAGTAGTGGATGACCTCAAAATTGATATCAGCTACTTCAAATGCAACTTGTGTATGCATGATGTGGACAGCGTGGAGACGTTTATGACACATTTGTTACGCGAGCATAATAAAGCGGTCAACTTCGAAGTGCCGTTTGGTGTGTTGCCGTATAGACAGAACGAGGCTGGCGAATGGCTGTGCCTGTATTGCAAAAAAAAGTTCCAAGGGTTCTCAGAGATTAACGGACATTTGAGGAGTCATGCGACGTTGTTCACTTGTGATAACTGTTCCGCGACCTTCTTATCCGAACACGGACTCAAACAGCACGAGCGTAAATTCAAGTGTTACAGCTCGGGATATAAACCACGATATGGCATGGCTTTGAGGCAAAGGCGTAACACGGAAATGATCCTGCAGTGCTCCACAGCTTGGCCGTTCAGAACTTGGGGTCAGAACTTCAATTGTGTCCTCTGTCGCGTCCAATCAAATGATCCGAACGGCCTCCGCGCTCACATGGCCTGCCATCACTTGAACTACGACATCAAACTAGCCTTTAGCAGGAAATTACGCAGGGAATTCCTCAAAGTGGACATCACGGATTTGAAATGTAAACTCTGTTTCATCCATATAAATTCGCTGGAAGATTTGCTGTCCCATTTGAAGGATTACCACAAACAACCAATTGATAACGACGTGGAACTCGCTGGAGTACTCCCTTTCAAGCTTAACGATGGATCAGATTGGAACTGTGCTATATGTAAAACTAAGTTCTCAGATTTCCTATCACTGAAGAAGCATACCGTTGAGCATTTCCAGAAATACGTTTGCGATACTTGCGGGGAAGGTTTTATAACTGAAGCAGCTTTGAAGGCTCACGTGAAAATCCCTCACGACAACAAGTACAACTGCAGGAGGTGTAAGGCAACCTTTCTGACTTTGGAAGAGAGGAATATACATATGAAAACGCAGCACACGTCGCTGCCATATATGTGTACGTATTGTAAGGAGAAGCCCTTACCTAGGTTCGCGACGTGGGAGTTGAGGAGGCGTCATTTGATGGAGATGCACAATTTAAGGCCGGGGGCGGAGATGTACGAATGTACCACTTGTCATATGATGTTCAAGTCTCGATCCCAGAAGTACCATCATAACGTCAAAGTTCATCGCACTAAAAAGGATACGGAGTTTGGTTTCTCGTGTGAGCACTGCGCCAGAGGGTTTGCGACTAAGCTGTCCCTTGATAAGCATGTGGCAAAGAAACATTTTCATGTTTGA
- Protein Sequence
- MKTDHVNTDFKNVFYRTKDNLIKVDITDLKCNICHQDIQDVDTLMGHLSRDHNKPVRFNARFGVLPYKQNAIDHWVCVYCQKNYLEFIQFKRHITTHFMNFSCEKCGTMFISEHALRDHRRQVKCFRTAYKPRNGRVMRPRSNAEIILQCSTACPFRTWKSNFNCVFCRVQSSDPSTLRAHMLTRHENYDVQAAFYKKLGKEFLKIDITDLQCKLCFMPIENFENLTYHLKNDHQQPINSDAQLGVLPFRLNDGSIWKCTMCPNEFKDFISLKKHTSEHFQNYVCDTCGEGFITESAMIAHTKIPHENKYSCSRCVATFSTLEERNVHVKTQHTSTPYMCVYCKDRPRFANWELRKKHLMEVHNYKTGPRTDSDGLKDKERKQKMRLFERSVMQNPLRQNAVLVLRYSTAIPFKTRFNRILCSYCYIEFETIETLRDHVKAKHAKVDYNSAFYKVVDDLKIDISYFKCNLCMHDVDSVETFMTHLLREHNKAVNFEVPFGVLPYRQNEAGEWLCLYCKKKFQGFSEINGHLRSHATLFTCDNCSATFLSEHGLKQHERKFKCYSSGYKPRYGMALRQRRNTEMILQCSTAWPFRTWGQNFNCVLCRVQSNDPNGLRAHMACHHLNYDIKLAFSRKLRREFLKVDITDLKCKLCFIHINSLEDLLSHLKDYHKQPIDNDVELAGVLPFKLNDGSDWNCAICKTKFSDFLSLKKHTVEHFQKYVCDTCGEGFITEAALKAHVKIPHDNKYNCRRCKATFLTLEERNIHMKTQHTSLPYMCTYCKEKPLPRFATWELRRRHLMEMHNLRPGAEMYECTTCHMMFKSRSQKYHHNVKVHRTKKDTEFGFSCEHCARGFATKLSLDKHVAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -