Mjur011738.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995236.1:2677732-2689609[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0026 0.12 13.3 0.4 1 23 305 328 305 328 0.94 2 9 0.11 5 8.2 1.0 1 23 360 383 360 383 0.96 3 9 0.002 0.092 13.6 5.0 1 23 428 451 428 451 0.97 4 9 1.3e-05 0.0006 20.5 3.0 1 23 455 477 455 477 0.98 5 9 0.098 4.5 8.3 0.0 2 23 485 505 485 505 0.96 6 9 0.0099 0.46 11.4 2.4 1 21 511 531 511 536 0.92 7 9 8.5e-05 0.0039 17.9 0.1 1 19 544 562 544 565 0.95 8 9 0.0019 0.087 13.7 1.8 3 23 591 611 590 611 0.97 9 9 0.00016 0.0075 17.0 2.7 2 23 618 640 617 640 0.96
Sequence Information
- Coding Sequence
- ATGGAAGACGATGCAAAACTAACGTTAAAAAAGATCTGTTGTGCATGCCTAAGCGTTGATAGGAAATTGAGTCAACTTTGTAAGCTCAAGGATGGTGTAAACAACTTATTTACACTAGTTTCGGTGGACTCCGAGGCATATGAGGCTATGTTCAGGAGAGATGGGACACAGCTATACATCTGTTGGGAGTGTGGTGCGCTGATGAGGAGGCAACGGAGGTTTATTGACCAGGTGTGCGATGCTCAGAAACAGCTGTCTCAAATTATTGATGGTCAAGTTATTTTGAAACCCCAAAATAGTCTATCAAAACTAACTAGGATTCACCAAAATACATACGACAAAGAATTTATATTTCACGATATTGCCATAGACAATTTTATAGACTGTGGACCTGATATTCACATTCCAGTAAAATCAGAAACACCTTTGATAGACATAGATTATGAATTGGCTAGTGTAAGTGATGGAGAATCAACCATAGATAATGTAGAAGAAATTACAGTATCAGAAAATAAATTATTAATAAAACCTCTTACCTCGAATAAAAGACTATCAAAAGGAGAATCCATAGACAACATAGATGATATTATAGAAGTATTAGAAAATGAAATAAAAGTTAATATTATCAATGAAAAAGTGGAGAGTCAACCTAAATTAAATAATATAACAGTAGTAGATAGAAAATTTGAAATAAAACCTCTTGAAAATAATAGAAAATTAAGAAGTAAAAGTACATTTAAAGATCCCAAAGATAAAAAGATTAAAATAGAAACTCTTTGGAACAAAAGAAAAGTTAAGAAAGAAGAGGATTTCTTAAAAGAAGATGGTTTCTCTAGAATGAGAATGACTGAAGAAGAATTGTTAGCTAGTATTGAAAGAAGGAAGTCTGAAAATGATTATGTGCTCGCGTCATACAAGTGTGAGTCTTGTGTAGAAGTTTTTAAGGATCAAAATGATTTGGAGGAACACAATTCAAAATCGCATTTACAGAAATCGAAATTCATACAATGTGACATCTGTCAAGTTTACATAAAGTTCTGGTGGTTAGCACAACACAAGGACGAACATTACGTCAAATATCAGTGTAACGAATGTACTGAAGTGTGTTACAATGTGATAGATATGCTGTTACATTTGAAGAACACGCATGATATGCGGAATGTGTTAACCAAGGATATAATCAGACGGCTCAAAAGAAGAGCGCAACAAACGAAACCAGATTTGGCGCCAAAAAAGAGCGATGTAACAGAAGAACAGACAAACGAGGATTCACCATCAGGGTATAAATGTGCTGAGTGTAATAAGTGTTTTGAGAACAGATACCAGCGATACAAGCACGTCATGAGACAGCACAGGGAGGGCCATAAGTGCGACACGTGCGGCAAAACCTTCGCGTTCAAAAACACGCTCACCAAACATGTACAGATCCACGCGGCCCCCCAACCGATGGAACAATGTGCAGTCTGCGGTAAGATGGTGCGTCGCGACGGCGTCAGAGCGCACGCGCGCATCCACGGCGCTCGCGCGACGTTCCACTGCGTCGCGTGCGACAAGCGATTCGTGTCGCGCGACTCTTACGAGAAGCACCTCAAGTACTCCAGCAAGCACGCCGTCACCGATGTACGCAAATACAAATGCACGATGTGCGACAAAGGCTTCCGCACAGCAACCGCACTGAACGACCACGCTCTGGCGACTCGTCGCTGCGTCACGCGACACGTCAGCCGCGCGCACCTCGGCATCAAAGAGAAGTCGGGCGACAAGATACTGTGCCAGACTTGCGGGAAGGCTTTCAGGGACACAAAGTGTCTCCGCGAACACGAACTAATACACACGGGCGAGAAACCCCTCTCCTGCGATCTGTGTGGACGCACGTTCAGGCAGAGTGCGTGCCTGTACACGCACAAGCGTCGCGTGCACAAGGTGACGCCCGCCAGGCTGCGCGTGCGCCACACGACGCCAGACTGCGCCACATCCGCGAACTCTGTTACTTTGAATGTGAATAAAAGCGAAATAAGCTAA
- Protein Sequence
- MEDDAKLTLKKICCACLSVDRKLSQLCKLKDGVNNLFTLVSVDSEAYEAMFRRDGTQLYICWECGALMRRQRRFIDQVCDAQKQLSQIIDGQVILKPQNSLSKLTRIHQNTYDKEFIFHDIAIDNFIDCGPDIHIPVKSETPLIDIDYELASVSDGESTIDNVEEITVSENKLLIKPLTSNKRLSKGESIDNIDDIIEVLENEIKVNIINEKVESQPKLNNITVVDRKFEIKPLENNRKLRSKSTFKDPKDKKIKIETLWNKRKVKKEEDFLKEDGFSRMRMTEEELLASIERRKSENDYVLASYKCESCVEVFKDQNDLEEHNSKSHLQKSKFIQCDICQVYIKFWWLAQHKDEHYVKYQCNECTEVCYNVIDMLLHLKNTHDMRNVLTKDIIRRLKRRAQQTKPDLAPKKSDVTEEQTNEDSPSGYKCAECNKCFENRYQRYKHVMRQHREGHKCDTCGKTFAFKNTLTKHVQIHAAPQPMEQCAVCGKMVRRDGVRAHARIHGARATFHCVACDKRFVSRDSYEKHLKYSSKHAVTDVRKYKCTMCDKGFRTATALNDHALATRRCVTRHVSRAHLGIKEKSGDKILCQTCGKAFRDTKCLREHELIHTGEKPLSCDLCGRTFRQSACLYTHKRRVHKVTPARLRVRHTTPDCATSANSVTLNVNKSEIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -