Mjur006342.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995233.1:2325337-2329183[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.16 7.5 7.6 3.3 1 19 26 44 26 47 0.90 2 23 0.0055 0.25 12.2 0.5 1 21 70 90 70 91 0.93 3 23 0.011 0.53 11.2 0.9 3 23 96 117 95 117 0.94 4 23 0.95 44 5.2 1.5 3 23 125 146 123 146 0.94 5 23 0.38 18 6.4 1.8 1 23 152 174 152 174 0.95 6 23 0.15 6.9 7.7 3.5 1 20 203 222 203 224 0.90 7 23 0.0055 0.25 12.2 0.5 1 21 247 267 247 268 0.93 8 23 0.0046 0.21 12.5 0.5 3 23 273 294 272 294 0.94 9 23 2.2 1e+02 4.1 1.5 3 23 302 323 300 323 0.94 10 23 0.38 18 6.4 2.3 1 23 329 351 329 351 0.97 11 23 0.15 6.9 7.7 3.5 1 20 380 399 380 401 0.90 12 23 0.0055 0.25 12.2 0.5 1 21 424 444 424 445 0.93 13 23 0.0046 0.21 12.5 0.5 3 23 450 471 449 471 0.94 14 23 2.2 1e+02 4.1 1.5 3 23 479 500 477 500 0.94 15 23 0.38 18 6.4 2.3 1 23 506 528 506 528 0.97 16 23 0.002 0.094 13.6 1.9 1 23 534 556 534 556 0.98 17 23 6.7e-05 0.0031 18.3 0.8 2 23 563 585 562 585 0.96 18 23 0.13 6 7.9 3.3 1 20 595 614 595 616 0.90 19 23 0.0069 0.32 11.9 0.3 1 20 639 658 639 660 0.93 20 23 0.024 1.1 10.2 2.5 3 23 665 686 664 686 0.94 21 23 0.21 9.8 7.2 4.1 1 23 721 743 721 743 0.97 22 23 0.00077 0.036 14.9 1.4 1 23 749 771 749 771 0.98 23 23 6.2e-05 0.0029 18.4 0.6 2 23 778 800 777 800 0.96
Sequence Information
- Coding Sequence
- ATGGATATGACTAGGGCATCAGCTAGTAACACAAAATCGCTTCCCGATGGCGATTACAGAAGAGACGGTGACACATACATCTGTAACCACTGCGACAAGACATGTGTCCAGCTGACGGAGATGCTACTACACTCTTGCTCCAAGCCTGTACTAGCACAGCAAGGGATAGTAGTGCGTCCCGGCGAATACAGGACAGAAAGCGGCAAATTCATCTGCAACTACTGTGATAAGAGATATAGGATCATGAGGGGTCTCCGAAAACACTTGACTATGACAACCAAAGATTGTCCGTACTGCGAGCTCCGTTTCTGTAACACTTCCGCATTCATAGTTCACAAGTTAAACGTTCACAACGTTGATGATAGAATCAACTGTGAGGCGTGCGATTTCAAATGCAGCTCAAAAATGGTGCTCGATCGTCATCTAAAAATATTCCACAAATTGGGAAAGATATATTCCTGCAAACAATGTGACTATGATACGTTTAATGTCCAAAGTCTGTATAGGCATAGAGTTAACCATACGACTGTCAAAAGATTCGTCTGTACTTTCTGTGGTGACACAAAATCGCTTCCCGATGGCGATTACAGAAGAGACGGTGACACATACATCTGTAACCACTGCGACAAGACATGTGTCCAGCTGACGGAGATGCTACTACACTCTTGCACCAAGCCTGTACTAGCACAGCAAGGGATAGTAGTGCGTCCCGGCGAATACAGGACAGAAAGCGGCAAATTCATCTGCAACTACTGTGATAAGAGATATAGGATCATGAGGGGTCTCCGAAAACACTTGACTATGACAACCAAAGATTGTCCGTACTGCGAGCTCCGTTTCTGTAGCGCTTCCGCATTCATAGTCCACAAGTTAAACGTCCACAACGTTGATGATAGAATCAACTGTGAGGCGTGCGATTTCAAATGCAACTCAAAAATGGTGCTCGATCGTCATCTAAAAATATTCCACAAATTGGGAAAGATATATTCCTGCAAACAATGTGACTATGATACGTTTAATGTCCAAAGTCTGTATAAGCATAGAGTTAAGCATACGACCGTCAAAAGATTCGTCTGTACTTTCTGTGGTGACACAAAATCGCTTCCCGATGGCGATTACAGAAGAGACGGTGACACATACATCTGTAACCACTGCGACAAGACATGTGTCCAGCTGACGGAGATGCTACTACACTCTTGCACCAAGCCTGTACTAGCACAGCAAGGGATAGTAGTGCGTCCCGGCGAATACAGGACAGAAAGCGGCAAATTCATCTGCAACTACTGTGATAAGAGATATAGGATCATGAGGGGTCTCCGAAAACACTTGACTATGACAACCAAAGATTGTCCGTACTGCGAGCTCCGTTTCTGTAGCGCTTCCGCATTCATAGTCCACAAGTTAAACGTCCACAACGTTGATGATAGAATCAACTGTGAGGCGTGCGATTTCAAATGCAACTCAAAAATGGTGCTCGATCGTCATCTAAAAATATTCCACAAATTGGGAAAGATATATTCCTGCAAACAATGTGACTATGATACGTTTAATGTCCAAAGTCTGTATAAGCATAGAGTTAAGCATACGACCGTCAAAAGATTCGTCTGTACTTTCTGTGATAAGGCCTTTCTAAGGTTAAAGACTTTAAAAATGCACAAGAGAATTCATACGAATGAGCGCACTAAAGTGTGTAAGGTATGCCAGCAGGCATTCGTGCAGAAAGCCAGTCTCAACTACCATATGAAAAAATATCATCCAGAAGCTCGAAGAGACGGTGACACATACATCTGTAACCACTGTGACAAGACATGTGCCCAGCTGACGGAGATGCTACTACACTCTTGCACCAAGCCAGTGCTAGCACAGCAAGCGATAATAGTGCGTCCCGACGCATACAGGACAGAAAGCGGCCAATTCATCTGCAACTACTGTGATAAGAGATATAAGATCATGAGAGCTCTTCAACAACACTTGACTATGACAACCAAAGCCTGTCCGCACTGCGAGCTCCATTTCTGTAGCGCTTCCGCATTCATAGTCCATAAGTTAAACGCTCACAATGTTGATGATAGAATCAACTGTAAGGCGTGCGATTTCAAATCCTGCTCGCAAAGGGTGTTCGTCAATCATCTCAAAGGATTCCACAAATTGGGAAAGATATATTCCTGCAAGCAATGCGACTATGAGACCTATAATATCACATATCTGTGTAAGCATCGAGTTAGCCATACGACTGTTAAAAGATTCGTATGTACTTTTTGTGATAAGGCCTTTCTAAGGTACCGGAATTTAAAAATGCACGAGAGAATCCATACAAATGTGCGCACTAAAGTGTGTAATGTATGCCAGCAGGCCTTCGTGCAGAAAGCCAGTCTCAACTACCACATGAAGAAATACCATCCTGAAGCTTTGTAA
- Protein Sequence
- MDMTRASASNTKSLPDGDYRRDGDTYICNHCDKTCVQLTEMLLHSCSKPVLAQQGIVVRPGEYRTESGKFICNYCDKRYRIMRGLRKHLTMTTKDCPYCELRFCNTSAFIVHKLNVHNVDDRINCEACDFKCSSKMVLDRHLKIFHKLGKIYSCKQCDYDTFNVQSLYRHRVNHTTVKRFVCTFCGDTKSLPDGDYRRDGDTYICNHCDKTCVQLTEMLLHSCTKPVLAQQGIVVRPGEYRTESGKFICNYCDKRYRIMRGLRKHLTMTTKDCPYCELRFCSASAFIVHKLNVHNVDDRINCEACDFKCNSKMVLDRHLKIFHKLGKIYSCKQCDYDTFNVQSLYKHRVKHTTVKRFVCTFCGDTKSLPDGDYRRDGDTYICNHCDKTCVQLTEMLLHSCTKPVLAQQGIVVRPGEYRTESGKFICNYCDKRYRIMRGLRKHLTMTTKDCPYCELRFCSASAFIVHKLNVHNVDDRINCEACDFKCNSKMVLDRHLKIFHKLGKIYSCKQCDYDTFNVQSLYKHRVKHTTVKRFVCTFCDKAFLRLKTLKMHKRIHTNERTKVCKVCQQAFVQKASLNYHMKKYHPEARRDGDTYICNHCDKTCAQLTEMLLHSCTKPVLAQQAIIVRPDAYRTESGQFICNYCDKRYKIMRALQQHLTMTTKACPHCELHFCSASAFIVHKLNAHNVDDRINCKACDFKSCSQRVFVNHLKGFHKLGKIYSCKQCDYETYNITYLCKHRVSHTTVKRFVCTFCDKAFLRYRNLKMHERIHTNVRTKVCNVCQQAFVQKASLNYHMKKYHPEAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -