Basic Information

Insect: Maniola jurtina
Gene Symbol: -
Assembly: GCA_905333055.1
Location: HG995233.1:2762240-2776089[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 8.5e-06 0.00039 21.1 4.1 1 23 501 523 501 523 0.99

2 8 0.0011 0.051 14.4 6.4 1 23 529 551 529 551 0.98

3 8 0.00012 0.0057 17.4 2.4 1 23 557 579 557 579 0.98

4 8 0.0002 0.009 16.8 7.7 1 23 585 607 585 607 0.98

5 8 0.00027 0.013 16.3 1.3 1 23 613 635 613 635 0.98

6 8 6.5e-06 0.0003 21.4 3.3 1 23 641 663 641 663 0.98

7 8 2.5e-05 0.0012 19.6 3.3 1 23 669 691 669 691 0.98

8 8 0.00029 0.014 16.2 1.5 1 23 697 719 697 719 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	8.5e-06	0.00039	21.1	4.1	1	23	501	523	501	523	0.99
2	8	0.0011	0.051	14.4	6.4	1	23	529	551	529	551	0.98
3	8	0.00012	0.0057	17.4	2.4	1	23	557	579	557	579	0.98
4	8	0.0002	0.009	16.8	7.7	1	23	585	607	585	607	0.98
5	8	0.00027	0.013	16.3	1.3	1	23	613	635	613	635	0.98
6	8	6.5e-06	0.0003	21.4	3.3	1	23	641	663	641	663	0.98
7	8	2.5e-05	0.0012	19.6	3.3	1	23	669	691	669	691	0.98
8	8	0.00029	0.014	16.2	1.5	1	23	697	719	697	719	0.98

Sequence Information

Coding Sequence: ATGCGGTGTTTTGTGCCTTTCTGCAAAAATGCTTCGGAAAATGTATCGGAAAGGGATGGGCAGAGGATTAGTTTCCATGGTTTCCCCAGCGAAGTGCATCGCCGTGCTGCGTGGCTCCGAGCCCTCGGCCAACAGGACAGTCACCTACCAGACTCTGCTGTGGTCTGCTCGCAGCATTTTCTGTGTGATGACATTCATGAAACAGGAGGTGGCTTGAGGCAAATAGAAATCAGCGCTATGCCTTCCACAGTGCAGGTTTGCATGATATGCCTAGACACTGACAGCAAGCTGTTCCTAATGGGTAAACACAAATTGCAAGAAGCATATGAAAAGTTAACTGGACATCGTTTGTGTGATCTAGCGAACCTAAAACAAACACTTTGTGTACAATGTGCTCACAGTCTGATAAAATTTAATAGATTTAGAGACAAAAGCTTGAGAGCCCGTGCACTGATGATGGACTTAGTTGAAAAACATGAATTGATAACAAGGCAACATGTAGAAATGATAAACCGGTCAAAACACCAACTAAAGAGTAACATGGTGTTGACAACACTGGGACCTGACCACTGCGACTTACACATACTAGAACACCCCCCAGAAGACAAACAGGCAGAAAAAGAGGAATCTGAACACATGTTTGTTGTGAAAACTGAAGAAACTGATGACTCTATGTCGGTTGATGAAGACACGGAAGTGATGTATGAAGATGATGAAAATGTCGATGATTTTGTTCCGGATCCATTAAAGTACGAAAGTGCTCCTTTCCAATGTACACTTTGTTTGGAAGAATTCCTCCTTGAACATGCATACATGCAACATGTGAGCATGCATCTGCAGAATGGCGATGATGATGGGGAATATGACACATCACGAGTGTGCGAGCCTCGTACAGCTGTGAGCTGTAGCGCGTCACGCTCTTCACTCCTCACTGAGAACAAGGCGGCAGACCCCAGCACTTGCACACACGCTGCGCTCGCCGCAGCAACTGCCTTGTCGACGAGTGTTGCGACAAATGGGAACAAAGGCCACGCGACTGAAGAAGCCGATATATTCCAGAAAACCAATGACGATGTAACTGCCTTGTCGACGAGTGTTGCGACAAATGACGAGAACAAAGTCCACGCGACTGAAGAAGCCGATATATTCCAGAAAATCAATGACGATGGTGAATTTGAAAACCAATCATCTAGTAAAATGAGCGTAAACATTAATACATTCAAAAATTGTGTAGTCAAGTTATATGATATTTTCACAAATATGAAAGTTGTTACGAAACATGATGGACCGGTGACGAGAACACGAATAACTGATATGGTTTGTGACAGTCGGGATATTGCGTCTAAAGATTCCAGTTATCGGGCAACAAGTCAGAACGAAGTCCTTCCGACAGAATACATTGTACCAGTCACTAGTAGTAGTACTAGTCTGAGTAATGTCATTAATACATTACAATGTATTAATTCATCACAAAATAGTTTACACACTGAGGAAGGGTCGTTCACTTGTGACATTTGTCGAAAAACTTGTAATAGAAAAAGTCTCTTAGTTAAACATATAAAGACTCACTCTGAAGTAAGAGGGTTCACTTGCAAGACTTGTCAATACAAATGTAAATATCAATATCTTTTGACAAGACACATGGTAACTCACACTGGTATAAAACCTTTCTCGTGTGACTTATGCGATTCTAAATGTGCTCGAAATCGCGATCTAGTGAGGCACATGAGAACTCACACGGGTATAAAACCATTCTCGTGTAAGTTGTGCGATTATAAATGTGCACATAATAGCCATCTAGTGACGCACATGAGAACTCACACTGGCATAAAACCTTTCTCGTGTGACTTATGCGATTATAAATGTGCACGAAATAGCGATCTAGTGCCGCACATGAGAACTCACTCGGGTATAAAACCATTCTCGTGTAAGTTGTGCAATCACAAATTTGCACGAAATTGGAATTTAGTGACGCACATGAGAACTCACACGGGTATAAAATCATTCTCGTGTAAATTATGCAACTATAAATGTGCACGAAATGATAATCTAGTGATGCACATGAGAACTCACTCGGGTATAAAACCATTCTCGTGTAAGTTGTGCGATTACAAATCTTCACTTAATAGCAGTCTAGTGAAGCACATGAGTACTCACACTGATATAATATAA
Protein Sequence: MRCFVPFCKNASENVSERDGQRISFHGFPSEVHRRAAWLRALGQQDSHLPDSAVVCSQHFLCDDIHETGGGLRQIEISAMPSTVQVCMICLDTDSKLFLMGKHKLQEAYEKLTGHRLCDLANLKQTLCVQCAHSLIKFNRFRDKSLRARALMMDLVEKHELITRQHVEMINRSKHQLKSNMVLTTLGPDHCDLHILEHPPEDKQAEKEESEHMFVVKTEETDDSMSVDEDTEVMYEDDENVDDFVPDPLKYESAPFQCTLCLEEFLLEHAYMQHVSMHLQNGDDDGEYDTSRVCEPRTAVSCSASRSSLLTENKAADPSTCTHAALAAATALSTSVATNGNKGHATEEADIFQKTNDDVTALSTSVATNDENKVHATEEADIFQKINDDGEFENQSSSKMSVNINTFKNCVVKLYDIFTNMKVVTKHDGPVTRTRITDMVCDSRDIASKDSSYRATSQNEVLPTEYIVPVTSSSTSLSNVINTLQCINSSQNSLHTEEGSFTCDICRKTCNRKSLLVKHIKTHSEVRGFTCKTCQYKCKYQYLLTRHMVTHTGIKPFSCDLCDSKCARNRDLVRHMRTHTGIKPFSCKLCDYKCAHNSHLVTHMRTHTGIKPFSCDLCDYKCARNSDLVPHMRTHSGIKPFSCKLCNHKFARNWNLVTHMRTHTGIKSFSCKLCNYKCARNDNLVMHMRTHSGIKPFSCKLCDYKSSLNSSLVKHMSTHTDII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00954623;
90% Identity: iTF_00954623;
80% Identity: iTF_00954623;