Mjur000328.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995223.1:1197029-1203867[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0039 0.18 12.7 0.6 1 23 285 308 285 308 0.96 2 11 0.17 8.1 7.5 2.8 1 19 325 343 325 347 0.87 3 11 2.9e-06 0.00013 22.6 0.9 2 23 353 374 352 374 0.97 4 11 0.0024 0.11 13.3 1.9 1 23 378 401 378 401 0.94 5 11 0.51 23 6.0 0.5 2 23 405 425 404 425 0.92 6 11 2.8e-05 0.0013 19.4 1.0 2 23 496 517 495 517 0.96 7 11 0.024 1.1 10.2 0.2 3 23 538 559 536 559 0.95 8 11 2.6e-06 0.00012 22.7 2.6 1 23 565 587 565 587 0.99 9 11 6.7e-05 0.0031 18.2 3.0 1 23 592 614 592 614 0.97 10 11 0.00032 0.015 16.1 2.9 2 23 621 643 620 643 0.95 11 11 0.026 1.2 10.1 3.5 3 20 682 699 681 703 0.88
Sequence Information
- Coding Sequence
- ATGGAGGAGGAAGAAATTGTCATCGGCGAAATGGATGCTGACCATCCAATTTTGTTCATACCTAAACACTTAACCACGCTCGAAACGAACTGTGCAGTATCTGATAACGTATTTATTGACTTGAATATAACGTCTGCGGACTCAGAGGGAAATGTGATGAACGTATATTCTGGGTTTTGCAACGTTAAAGTCATAAACAGTTATGATGTTGATGATAACGATGGCGAAATGAATTATCTATCCGATTCGGATAATGTATTGGGTGAAATCACACTACCCGACTCGAATGATAGCAATGAGACTGAAATGTTGATAGATCCAACATATAATCCATATGTTAGTGGTGCCATGGAAGCTGAGAACTACTCCATTTACCAGTCTCATAGAGAACACATCACAGTGAGACAACACAGATCTTATCTAAAGAGAAAAGTGAACAACTACAGTGAATCCATGCAGTATGCTCAATTCATGGAGTTTGAGCACACAAAGTTTAAACAGGTGAAAATGAGCAATGAAACAAATCCACAACACGTTGATCCCAGTTTAAACGACCAACTCGAGTGTGGATTGTTTCTAACGCAGTTACCAGAAGAAATAAGGCTAGCCAATGAGAACCGAGCTAGAGAGGAGAGGAAATACATAGATTTACCCAGCGATAATGTCGCCATCAAGCAGCTGATGTCCTCGGAAGTGCAGGCCATGCCCCGGACGCAACACACCATTATGTTGCTTGGAGACAATTCGCAGAATGGACAAACCATTCAGACTATGGCGATAAATGATCCACGGGTTAAGTGCCTTAAGAGTTGTGCTAGTGATTTTGCTGGTAACAATCTGCGTCAAAAGAAATACCAGTGTGAAAATTGCAAACAACTATTCTATCAGATATCAGCATTCAGACAGCATATACAAGGCATACACACACCAAACTCTCAGAACCCAGACGGGCCGACAAACAATGGTGTGGGCTTCATATGCATCGAATGCAATAAAAGTTTCAAAAGTCGCGAAAAGTTCGAAACACACTGCCTCGGCCACGGCAACCCAGATGTAGAATGCAGTCAATGCAAAAAAGTCTTTGCATCCAAAACGACTCTTCAGAACCACATGAAAATACATTTAAGAAAACATAAATGCCCGTACTGTAGAAAACGTTATCAAAAATTCGAAGACTTGACAGCTCATTTGGAGCAGGCTCACCTTGTTTCTAAATGCGATGTTTGTAATTTTTCTTCATCTACATCAGCATTGGAGAAACACAGAGACGAACATAAGTTGGATGGAGTGCTAGTTCAGGAACCTGACTTCGAAGCTTCTAACTCTGAAGACATTCTGTCACTGAATGACTGGCCCGCTAGTGCTGTAGACTACAGCGTGCCCTATGTGGAGAGCAGGCATCATCATGATTCTGGAATAGCTCAAGCAACGAGCAATGAATTGTTCCTGCGAGACGCCAATAAAGCGAAGAAATGTAAGACAAAGAGATGTAACATATGCCTAAAAACTTTCGACCGCCTTAGTGATTTGAAGCGTCACCTTATCGAGCACATCGTTCGGAGCAGCCTGGCGAAGAACCCCTCCGACGACTCCGGGATCCTCTGCATCAACTGCGACATTTGTCAGAGCCAGACCTTCTCCCGCATCGACGAGTACAAGGCCCACCTTCGCGAGCACGCCAAGCTAACCACCTACAAATGCACGATCTGCGCCAAAACCTTCAGCGACTCCAGCAACTTCTCCAAACACAAGAAAGTCCACGGTAACAAATACTTCCAATGCGACATGTGCAAGCGAAAATTCAACTCCAAAAGAACTCTAACCCAACACATAGAGTATCACATCAAAAACGCACCATTAAAATGCAATTATTGTGACAAAGAATTCTACTGCCAGTCGTCACTAAACAAACACATAAAATTAGCACATAAGTGCAGAGTAACCCGCTACAAATGTACGATCTGTGATGATCTGCTAGACTCCTTAAAGGAGAAATGGGACCACGAATGGATGGTACACAAAATCAGGAAAATAGTTGTGGACTGTCTACTCTGTGGGGAGAAGTTCAGAAAATATTCTGAACTCAAACGACATTGTAAATTGTTCCACGAAATAGAAATCCCACCGGCTAAGAGGCTGTTGAAGAAACGCAAGGCTCGTAAATAA
- Protein Sequence
- MEEEEIVIGEMDADHPILFIPKHLTTLETNCAVSDNVFIDLNITSADSEGNVMNVYSGFCNVKVINSYDVDDNDGEMNYLSDSDNVLGEITLPDSNDSNETEMLIDPTYNPYVSGAMEAENYSIYQSHREHITVRQHRSYLKRKVNNYSESMQYAQFMEFEHTKFKQVKMSNETNPQHVDPSLNDQLECGLFLTQLPEEIRLANENRAREERKYIDLPSDNVAIKQLMSSEVQAMPRTQHTIMLLGDNSQNGQTIQTMAINDPRVKCLKSCASDFAGNNLRQKKYQCENCKQLFYQISAFRQHIQGIHTPNSQNPDGPTNNGVGFICIECNKSFKSREKFETHCLGHGNPDVECSQCKKVFASKTTLQNHMKIHLRKHKCPYCRKRYQKFEDLTAHLEQAHLVSKCDVCNFSSSTSALEKHRDEHKLDGVLVQEPDFEASNSEDILSLNDWPASAVDYSVPYVESRHHHDSGIAQATSNELFLRDANKAKKCKTKRCNICLKTFDRLSDLKRHLIEHIVRSSLAKNPSDDSGILCINCDICQSQTFSRIDEYKAHLREHAKLTTYKCTICAKTFSDSSNFSKHKKVHGNKYFQCDMCKRKFNSKRTLTQHIEYHIKNAPLKCNYCDKEFYCQSSLNKHIKLAHKCRVTRYKCTICDDLLDSLKEKWDHEWMVHKIRKIVVDCLLCGEKFRKYSELKRHCKLFHEIEIPPAKRLLKKRKARK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -