Mjur022919.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995235.1:138944-141680[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0012 0.054 14.3 4.3 1 23 140 162 140 162 0.99 2 12 0.00093 0.043 14.6 10.0 1 23 168 190 168 190 0.98 3 12 0.00011 0.0052 17.5 1.9 1 23 196 218 196 218 0.98 4 12 0.0012 0.055 14.3 1.9 1 23 228 250 228 250 0.98 5 12 0.0001 0.0047 17.7 5.7 1 23 256 278 256 278 0.98 6 12 0.00013 0.0061 17.3 3.1 1 23 284 306 284 306 0.98 7 12 0.00013 0.0062 17.3 4.0 1 23 312 334 312 334 0.98 8 12 0.0017 0.08 13.8 4.2 1 23 340 362 340 362 0.96 9 12 0.00073 0.034 15.0 0.1 1 23 368 390 368 390 0.98 10 12 0.04 1.8 9.5 6.3 1 23 402 424 402 424 0.97 11 12 0.4 19 6.4 3.4 2 23 431 453 430 453 0.93 12 12 0.0087 0.4 11.6 3.3 1 23 459 483 459 483 0.93
Sequence Information
- Coding Sequence
- ATGAACGCTGAAGAAGAAATTAACAATGCTGGATTAGATGACATCAACTGCAAAACAAATACATACAATAGAGTAAATATATTGAAATCAAATGATGTTATGAAAAGTGTAACAAGTCTAAAAGAGCCACTGTTGATAATACAACGACTGACAGACTCATGTCACACTCCCAATATTACTACTTCTAAATATTTCAACTGTGAGGGAACAAGTGAAAATGTTGTCGCTACAATAGGAAACACTGCACCAGCCACCGATGATCAGACATCAGACACTTTGCTAAGTGAAACTCCAACGGTATGTTCAAATAATGATAGCATGATAAATCCGTTACCAGAAAAAAGGTCACTCGTGGGGAATATGTTAACTTGTGAAAGTCTCTCAGTAAAACAAAGGACTCACTCTAAAGTGACACTATTCACTTGCAAGTTTTGCCAATACAAAGCTAAACAAAAGTACCGTCTAACGGAACATATGAGAACTCATACAGGTGACAAACCTTATCATTGCAAGCTGTGCACGCACACGTGTGCACGAAGAAGTTCTTTGAGGAAGCACATGAAAACTCACACAGATGAAAAACCTTTTTCTTGTTCACTTTGCGACTATAGATGTAAAGTAAAAAGTCAGTTGGTGAACCACATGATTATTCATCCAGGTATGGTCTCGGCAAGTACTAAGTTCTCGTGTAAGTTGTGCAAATACAGATGTGGACTTCCCAGTAGTTTAGTTATACACATGAGATCTCACAGTGGTGAGAAGCCATATCAATGTGAGTTATGCACGTGTAGATATGCACGAAAAGGACATTTAAAGAGGCACATGAGCAGCCACACGGGTGACCGGCCATATGCTTGTGAGCTGTGCCATTACAAAGCTGTACGTAACAGTCATCTAGTGAGGCACTTGAGAACTCACACGGGAGAAAAGCCTTTTTCTTGCGAGTTTTGCAAATACAAGTGTGCACAAAGCAGTACTCTGGTGTCGCACATGAGAACTCACTCGGGTATAAAGCCTCATGCTTGTAAGTTGTGCAGTTATAAATGTGTATACAACAGGCAACTCGTCGCGCATATGAGAACCCACACAGGTGAAAAGCCTTATGCTTGCGAGTTATGTGAGTACAAAAGTGCAAGAAATAGAGGCCTAGTAAATCACATGAGAATTCACACTGGGGGACAGAGTCACAGGGGGGGACAGAGATTTTGTTGTGATTATTGCAAGTATAAATGTACATGGAAAAGTGACCTAGTAAAACACATAAGCACTCATACTAGGAAAGAGCCGCTTTGTTGCAATTATTGCGAGTATAAATCTATGAGGAAGCGTGACCTAATGGAACACAGCATGAAAACTCACACTGAAGTAAAGCTGTTTTGTTGCGATTCTTGCGAGTATATATCTAGTAACAGAAGGAGCCTAGTGAGACACATGAGAACTCGCACACATAAAAATGCTGTTGCTCGTTTGTGA
- Protein Sequence
- MNAEEEINNAGLDDINCKTNTYNRVNILKSNDVMKSVTSLKEPLLIIQRLTDSCHTPNITTSKYFNCEGTSENVVATIGNTAPATDDQTSDTLLSETPTVCSNNDSMINPLPEKRSLVGNMLTCESLSVKQRTHSKVTLFTCKFCQYKAKQKYRLTEHMRTHTGDKPYHCKLCTHTCARRSSLRKHMKTHTDEKPFSCSLCDYRCKVKSQLVNHMIIHPGMVSASTKFSCKLCKYRCGLPSSLVIHMRSHSGEKPYQCELCTCRYARKGHLKRHMSSHTGDRPYACELCHYKAVRNSHLVRHLRTHTGEKPFSCEFCKYKCAQSSTLVSHMRTHSGIKPHACKLCSYKCVYNRQLVAHMRTHTGEKPYACELCEYKSARNRGLVNHMRIHTGGQSHRGGQRFCCDYCKYKCTWKSDLVKHISTHTRKEPLCCNYCEYKSMRKRDLMEHSMKTHTEVKLFCCDSCEYISSNRRSLVRHMRTRTHKNAVARL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -