Basic Information

Insect: Maniola jurtina
Gene Symbol: prg
Assembly: GCA_905333055.1
Location: HG995211.1:10880716-10883359[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.51 23 6.0 4.1 1 20 177 196 177 200 0.83

2 10 0.0033 0.15 12.9 0.8 1 23 206 229 206 229 0.96

3 10 0.00011 0.0051 17.6 4.6 1 23 235 257 235 257 0.96

4 10 8.6e-07 4e-05 24.2 5.1 1 23 263 285 263 285 0.99

5 10 4e-05 0.0019 18.9 0.1 1 23 291 313 291 313 0.97

6 10 0.0013 0.062 14.2 0.5 1 23 319 341 319 341 0.95

7 10 0.00024 0.011 16.5 0.6 2 23 438 460 437 460 0.95

8 10 2.1e-05 0.00099 19.8 2.6 1 23 467 489 467 489 0.97

9 10 2.8e-05 0.0013 19.4 2.1 1 23 494 516 494 516 0.98

10 10 0.0022 0.1 13.5 0.0 3 23 525 545 523 545 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.51	23	6.0	4.1	1	20	177	196	177	200	0.83
2	10	0.0033	0.15	12.9	0.8	1	23	206	229	206	229	0.96
3	10	0.00011	0.0051	17.6	4.6	1	23	235	257	235	257	0.96
4	10	8.6e-07	4e-05	24.2	5.1	1	23	263	285	263	285	0.99
5	10	4e-05	0.0019	18.9	0.1	1	23	291	313	291	313	0.97
6	10	0.0013	0.062	14.2	0.5	1	23	319	341	319	341	0.95
7	10	0.00024	0.011	16.5	0.6	2	23	438	460	437	460	0.95
8	10	2.1e-05	0.00099	19.8	2.6	1	23	467	489	467	489	0.97
9	10	2.8e-05	0.0013	19.4	2.1	1	23	494	516	494	516	0.98
10	10	0.0022	0.1	13.5	0.0	3	23	525	545	523	545	0.92

Sequence Information

Coding Sequence: ATGGATGATTCCTTTATTATAGCTAATTTCCATGCGCTCTGCCGCCTTTGCCTGAGCAAAAGTAGTCTTACCACCTCAATCTTCAGTACTGCTCCTGATGATGAAACAAATATATCTCTAACCTCGAAAATCGCTGAATGCTTCGAACTACAGATGGACCCTAATGATGGTCTTCCTGCCAGGATTTGCTACAAATGTTTGTTTAAACTGAATAAATGTTCCAAATTCAGATCACAGTGTATTCAAAGTGAAGCTAGATTAAGACAGATAACAAGCAGTGTAAATGAGTTGGAAAACTCAAATTCATCTGAGCTCAGTCCTTTTAATTATGCCAATATGCAAGAATCCCAAAAACCCAAACCGGAAGATTATATTGTTGAGGACAGTGTTGTAATGGTTGTAGATCCTAGTCTTGATTATGACTCTTCGGAAGAGTCTGAAAATGTTGATCAAGCTGAAGTTGAAACAATAGAACGAAACAATACACCAGACGGAGAAGCAAATCCAGACTCATTTTACAAGAATGTTTTTATGTGTAAGTACTGTGACCAAGCTTTTATTTCACAGGAAAAATGTAAAGAACATGAACATGGCTTCCATGATCCCAACCTTCCTTACAAATGTGTTGAATGCAGTTTAGTGTTCGCTGAACGTAGTCAGTATGTTGCACACACTAAGCATGTGCATGGAAGTGACAAACCGTACCACTGTCAAGAATGTGAGAAATGTTTTGGTCGCAGGTCTGATTTACGTAAACATTCAATAGTACACACAGGTGTTAGACCTTTTCAATGCCATTATTGCTTAAAGAGTTTTTCTCGTAATACAAATTTGAGTAAACATCTGAGAATCCATGCAGGACACAAACCCCACGTGTGCCCTCTGTGTCCTCGTAGTTTTGTAGCAAATGGAGACCTACAGCGTCATGTTCTAGTTCATTCTGGAATGAAGCCATATGCCTGCCGGAAGTGTCCGCTGACATTTGGTAGACGAGATAAGCTTATTAAGCATGAAGTCAAACATGGCCCTGTTAGTCCCGAGCATAAAGACTATGATAATGAACAAGAAACACATGACATGGTTGTTAATGTAAACCCATTTAATAATTTAATGACGTCACCTACACAACTTAACTCTAGCAACACAAATGCTAATAGTGATTATGATTTGCCTAGAGTGCCAGATCACATTGCTGGTGAAGGAAGCTTTATAAGCCAAATGCAAAAGAATCCATCCACTTCAGGGAAACCAGTGCAAAATTCTCCCCCTAAACAAAAAATAACTCCAAGCAAAAACAGACCCAAAAATATTAAATGTCACCAATGCCCTAAAAGATTTGCTTCATTAGATGCTTACAAAACTCATGTGTCTATAGCACATAATATTGGTTCAAGAGTGTTCCAATGTAAGATATGTTTCAAAAAGTTCTCTAGAAAAAGAGAACTCGACCGTCATGTTACAATACACTCTGAGAAACCATTTAGTTGCAGTCAGTGTGATAAAAAGTTTGTTCGAAAAGACAAACTAGATAAACATGAACAGATGCATGAATGCTTGGTAATGAATATGCCTTGTATAGAATGTGGCGCCACGTTTGAAAAGAAAGCTGACCTAGTAGCCCACATTAAATCCCACTTTACTGATAATTTTGATGAAAAAATCCCAGACACTGAAATAAAAAAGGAGAATGAGCCAGATTTCCCTATGGATGACAATTTTTATGACTTAGAGACCTGA
Protein Sequence: MDDSFIIANFHALCRLCLSKSSLTTSIFSTAPDDETNISLTSKIAECFELQMDPNDGLPARICYKCLFKLNKCSKFRSQCIQSEARLRQITSSVNELENSNSSELSPFNYANMQESQKPKPEDYIVEDSVVMVVDPSLDYDSSEESENVDQAEVETIERNNTPDGEANPDSFYKNVFMCKYCDQAFISQEKCKEHEHGFHDPNLPYKCVECSLVFAERSQYVAHTKHVHGSDKPYHCQECEKCFGRRSDLRKHSIVHTGVRPFQCHYCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVANGDLQRHVLVHSGMKPYACRKCPLTFGRRDKLIKHEVKHGPVSPEHKDYDNEQETHDMVVNVNPFNNLMTSPTQLNSSNTNANSDYDLPRVPDHIAGEGSFISQMQKNPSTSGKPVQNSPPKQKITPSKNRPKNIKCHQCPKRFASLDAYKTHVSIAHNIGSRVFQCKICFKKFSRKRELDRHVTIHSEKPFSCSQCDKKFVRKDKLDKHEQMHECLVMNMPCIECGATFEKKADLVAHIKSHFTDNFDEKIPDTEIKKENEPDFPMDDNFYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00353374;
90% Identity: iTF_01021552;
80% Identity: -