Mjur013503.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Maniola jurtina
Gene Symbol
-
Assembly
GCA_905333055.1
Location
HG995209.1:8224355-8233853[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0092 0.43 11.5 0.0 2 23 199 221 198 221 0.94
2 11 0.018 0.81 10.6 6.4 1 19 281 299 281 304 0.95
3 11 1.1 51 5.0 0.4 6 23 314 331 312 331 0.95
4 11 0.033 1.5 9.8 1.7 3 23 339 359 337 359 0.96
5 11 9.1e-05 0.0042 17.8 2.9 1 23 367 389 367 389 0.97
6 11 7.5e-05 0.0035 18.1 0.4 1 23 398 421 398 421 0.98
7 11 0.00034 0.016 16.0 0.2 1 23 427 449 427 449 0.97
8 11 2.5e-06 0.00012 22.7 2.4 1 23 455 477 455 477 0.98
9 11 0.00078 0.036 14.9 0.7 1 23 482 504 482 504 0.98
10 11 4.5e-06 0.00021 21.9 4.2 1 23 510 532 510 532 0.97
11 11 0.00021 0.0096 16.7 2.9 2 23 539 561 538 561 0.95

Sequence Information

Coding Sequence
ATGAAAATGGCTCAAAATATAAAGGATTTGTGTCGACTCTGTGCTAAAGGCGAAGGATTTACCAAAGATTTGATAGATGATTGTAATAAGAATATTCTCAAAATGATACAGGAATATGTACATATATCCATAAATGAAAATGATAATTTACCCACAAAGGTGTGTTTAAATTGTGAGGAGAGAGTAGTATCATTTGAGCTGTTTGTCTTAGAATGTCTGAAAGTGCAGGATACATTGAAGAAAATGTGTTTAGGTGCATGTGAAGTAATGCCCATTAAGTTCGAAGATGGAATGATTGAGTTTGGAATACCACCAATCAAGTCTGAGGTTAAAGTAGAAATGATGCCAGAAGAATTAGTAAATGTTATAAATAATGAAGAACCATTTGGAGATGATTATGAAGACGATGACTACAGAAACAGTGACACAAAACTAGACAGTGACAGTGATCTTAGCGATGTTGTGACATTAGCAACACTTAAAAAAACAAAGACGAAAAAGAGTAAACGAAAGCAAATAAGTGAACAAGAGAAAATAGAGTTTAAGAACATACTCAAGAAATCCAACTTGAATGTTAAAGATTTTGTCAAACTAGAATGTAATATGTGTGAAGAAGCCATGTCAACGTGGAGCGCTTTAAGAGTTCATTACGCCAAAGTACACAAAAGCAAGCCCATGGTGTTTTGTCTGTGCGGCTTTATCATCCGGTCTAAAAGTGTTCTTTACAAACATGTATCAGATCACCGAATAGAAAGTCGTAAACTTAAAAAAAATGACTCTGATTCCGAAAAAACTGAAGAATCAAAGTATTCAAGTTTAAATGTCAATGATTTTGTAAATTTCACATGCACATACTGTCAGAAGGAATGCACAAGCTGGTACAGTTTGAAGTCCCATTGCGAAGGAAAACACAACACAACGCCAGTGGTTCGCTGTAGCTGTGGCATTACCTTAAAATCTAAATCTGTTCTTTACAAGCATGTCCAGGATCACAAGAATCCCAATGTCATCTGTTGTGATAAATGCCCACGTATAACTAAAACGGAAGCAGCAATGAACAAACACAAAATGAGGCATGTACCAAAGTCTGAAAGAAAGTTCTGTTGTTCTGCGTGCGATAAAGTGTTCAACTCTAAGGACATGCTCAAATCACACGAAAGGTCGCACATACCGATTGAAGAAAGGAAAATATACCGATGTGAAATATGTGATCTGAAATTCACGACTCGGTCGTCAGCAGCGTCGCATAAGCGCGTAGTGCACGAGAAAATCAAGAGCTACGTATGCGACCTGTGCGGCTACGCGTGCGGCACCAACGGCGAGCTGCGGCAGCACCGCGCCATACACAGCGACGACAAGCCCTTCGTCTGCAGGACCTGCTCCAAGCCATTCAAAACGTACTCGAATCTGAAGACGCACATGGACACGCACGAGGACACGTCGTACGTGTGCTTCGTGTGCAGCCGCGTGCTCAACAGCCGCCGCACGCTGCGCAAGCACCTGCTGGTGCACGAGGACAAGTGCCGCCACGTGTGCTCCTACTGTAACAAGGCCTTCAAGCGCAGGCAGACGCTCAAGGTGCACATGTACACGCACACGGGCGACAAGCCGCTCACGTGCAAGTGGTGTGATGAGCGCTTTTCATACGCGTCCACACTGCGCTCGCACCGCCTGCGCTGCCATCCCGACAAGATGGCCGTGCAGTACTCCTCCTACAACACGCACGTCGTCATGCAAGAGGGATTTATAAAAAACGACATGCCTCTGAACATTGCGAAAACCGACGTGGATGCTATTCAATAA
Protein Sequence
MKMAQNIKDLCRLCAKGEGFTKDLIDDCNKNILKMIQEYVHISINENDNLPTKVCLNCEERVVSFELFVLECLKVQDTLKKMCLGACEVMPIKFEDGMIEFGIPPIKSEVKVEMMPEELVNVINNEEPFGDDYEDDDYRNSDTKLDSDSDLSDVVTLATLKKTKTKKSKRKQISEQEKIEFKNILKKSNLNVKDFVKLECNMCEEAMSTWSALRVHYAKVHKSKPMVFCLCGFIIRSKSVLYKHVSDHRIESRKLKKNDSDSEKTEESKYSSLNVNDFVNFTCTYCQKECTSWYSLKSHCEGKHNTTPVVRCSCGITLKSKSVLYKHVQDHKNPNVICCDKCPRITKTEAAMNKHKMRHVPKSERKFCCSACDKVFNSKDMLKSHERSHIPIEERKIYRCEICDLKFTTRSSAASHKRVVHEKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRTCSKPFKTYSNLKTHMDTHEDTSYVCFVCSRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFSYASTLRSHRLRCHPDKMAVQYSSYNTHVVMQEGFIKNDMPLNIAKTDVDAIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01151436;
90% Identity
iTF_00953791;
80% Identity
-