Mjur014626.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995222.1:8599201-8610973[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00063 0.029 15.2 0.2 2 23 158 179 157 179 0.93 2 11 0.00091 0.042 14.7 2.4 1 23 185 207 185 207 0.96 3 11 0.00011 0.0051 17.6 0.3 1 23 300 322 300 322 0.98 4 11 3.1 1.5e+02 3.5 0.3 3 23 330 351 329 351 0.93 5 11 0.0016 0.073 13.9 0.0 3 23 404 425 402 425 0.90 6 11 0.0014 0.067 14.0 0.5 1 23 441 463 441 463 0.96 7 11 4.9e-05 0.0023 18.7 0.2 1 23 492 514 492 514 0.98 8 11 0.00098 0.045 14.6 0.2 1 23 520 542 520 542 0.97 9 11 0.00055 0.025 15.4 0.3 1 23 548 570 548 571 0.95 10 11 0.012 0.58 11.1 0.1 1 23 584 606 584 606 0.97 11 11 0.0095 0.44 11.5 0.1 1 20 764 783 764 786 0.93
Sequence Information
- Coding Sequence
- ATGGATATAATAAAAAACGAAATCAAAATGGAAGCAGAAGAGTTCAATCTGCAGTGGGAAGAAGAAAAGAATTTCATTAATAACAATATGACGAACTGTTTATTTCAGTCTAATACAGTGGCAAGCGAAGAAGTTATATGTGGTATTGAAAATGTACAGCATGAATCTTATGGTAATATGACTTCTGAAGAAATAATAGCACACACAGATCAAATGGCAGCAGAGAATCTGATGTTTCTGTCTCAAGATGTAGTTAGCTATACAGAGAGTGCTGAGTTGGCTGAGGACCCTAATGTAGAATGTGTCACAGAGGAAGTCATCACTGATGACTGGGTTCTATCAGGTGGGCAGGAAAGAGTTGAAGTGCCTTTAGAACATTTAGCAAATCCTGTTCAAGATGTTAAAATTGAAAACGACATTGATGTACCACTACCAACAGACCAAGATGAGTACACAGCAATGCGGCCGTGGCCGTGCGACTTCTGCTCGCGTCGGTTCCGCAAGAAGGCCGCGCTCATGAACCACATGGTGGCGCACCAGAACGACCGGCCGCACGCCTGCAACCTGTGCGGCGTGCGCTACGTGCGCAAGTGCGACCTCATGAACCACCTCAAGGTGCACGCCATGGTGCCTGACACGCCCGACATGATGGATTATGAAGAAATAGTTGCTCCTCAAGTGCTTAAAACTAAGAAAAAGAGAGGCAGACGGAAAAAGAATCCAGAACCAGTCGAGAACGGCGTCTGGGAGCACATGACGTCGGCGCGCACGCAGCAGTGGTCGCGCCGCGGCCGCGAGCCCAACAAGGCGGCGCCCTCGCCCGCGCCCGCGCCGCCCTCCCCGCCGTCACCCTCGCCCTCGCCGCCCGCGCCGCCGCCCACCGACCCCACGCGCCCCTTCGTGTGCCGCCACTGCGGGGTCGGCTTTGCCCGAGAGAAGGCCTTGCAGTCGCATGCGAGGATACACGGCGGGGACTCGCCCGTGGATTGCGGCGAGTGCGGCGAGCTGTGCTGGTCGCGTGAGGCGCTGCGCGCACACCGTGCCTCGCGCCACCCGAACCTGCCGCCTGTCGCGCCGCGAACCGACCTCGTCTACGAGGACAACTCGGGTGACGATATGGAGTTCAGGCTGTCCCCGGTAGCGCACAGCGGCAGCGAGCGCGAGCGCGAGCGGGAGCGCGCGGTGGACGTGCGCGGGCCCGAGCTGTTCTGCGGCGACTGCGGCGTGGCCTTCCAGCGCGCAGACCTGCTGCGACGACACGTGGCCGCCGCGCACAGTTACAAGCGGCACGACAGCACGAGCAGCGCGTGGGAGCAGGAGCACACGTGCGACGTGTGCGGCGAGAGCTGCACGGACGCGCTGCAGCTGCTGGCGCATGCGGAGAGGCACGCGGAGCGGCCGCGCACCAACAACAGGTTGAAGCGAACAGCCCGAGGGCGAAATAACACGTCGTCGAATAGTGGTTCTAGACAATTCCCGTGTAGAGAGTGTGGCAAAGTGTTTGGATCTCGAAGCTCCCAACAGATTCACGTCCGTATTCACACGGGGGAACGCCCGTACGCGTGTCGGTTTTGTTGGAAGGCCTTCGCGGACGGCGGCACACTGCGCAAGCATGAAAGGATTCATACTGGCGAGAAGCCGTACGCGTGCGCGGTGTGTCCGCGCGCGTTCAACCAGCGCGTGGTGCTGCGCGAGCACGTGCGCTCGCACCACTCCGCGCCCGACCGCCGCGCCAACGGTGGTTACCAATACGTGTGCGTGGTGTGCGGGCGGCCGCTGCACTCGAGCGCGGAGCTGGTGCAGCATCTCATTCAGCATTGCGATGAGAACACCGCCTTGAAGAGACAACCTCAAAACGGACCGAGAAAGTACAAGCGGCGGCGGAAAATCAAAACTGAAGAGTCGCCCTCGCCCCTCAACTGGAACCGCGCGTCCCCCTCGCCGGTGCGCACCCCTTCCCCCGCCCCCTCCCCCACCCGCTCGCACTCCCCCTCGCGGACAGAGTCCCGCTCCCCCTCCCTCTCGCCGCGGCCCACTCGCGCCGGTCGTCCCCCCCGCGCGCCGCCCGTCCCCCGCTTGTCCCCGCTGCCGCGGCGGCGGAGGCGGCGAGCGCCCGTTGCGCCCCCGCCGCGCCCCAAGATGATACACACCGAGGAACCTCGCTCTAAGGCTAAGCAGGCGCGGAATCGCAGACCGCCCCGGCACCCCGCAGACGATCTTAAAGCGATCGGGCCGCAGTCCCCCTCCCCGCCGCCCGCGGAGCCCACACCCTCTGCGGAACCCGGGGCCTTTAAGTGCGAGATGTGCTCTATGGAATTCCCACGACGAGACGCGCTCCTCCTACACGTGCCCGTACATATATGA
- Protein Sequence
- MDIIKNEIKMEAEEFNLQWEEEKNFINNNMTNCLFQSNTVASEEVICGIENVQHESYGNMTSEEIIAHTDQMAAENLMFLSQDVVSYTESAELAEDPNVECVTEEVITDDWVLSGGQERVEVPLEHLANPVQDVKIENDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAMVPDTPDMMDYEEIVAPQVLKTKKKRGRRKKNPEPVENGVWEHMTSARTQQWSRRGREPNKAAPSPAPAPPSPPSPSPSPPAPPPTDPTRPFVCRHCGVGFAREKALQSHARIHGGDSPVDCGECGELCWSREALRAHRASRHPNLPPVAPRTDLVYEDNSGDDMEFRLSPVAHSGSERERERERAVDVRGPELFCGDCGVAFQRADLLRRHVAAAHSYKRHDSTSSAWEQEHTCDVCGESCTDALQLLAHAERHAERPRTNNRLKRTARGRNNTSSNSGSRQFPCRECGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGYQYVCVVCGRPLHSSAELVQHLIQHCDENTALKRQPQNGPRKYKRRRKIKTEESPSPLNWNRASPSPVRTPSPAPSPTRSHSPSRTESRSPSLSPRPTRAGRPPRAPPVPRLSPLPRRRRRRAPVAPPPRPKMIHTEEPRSKAKQARNRRPPRHPADDLKAIGPQSPSPPPAEPTPSAEPGAFKCEMCSMEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01151458; iTF_01021560; iTF_01017964; iTF_01018822; iTF_00953777; iTF_00802145;
- 90% Identity
- iTF_00953777;
- 80% Identity
- -