Mjur011656.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995236.1:5078166-5093020[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.55 25 5.9 4.2 1 23 412 434 412 434 0.99 2 14 0.00062 0.029 15.2 2.6 2 23 537 558 536 558 0.98 3 14 0.0052 0.24 12.3 4.6 2 23 565 586 564 586 0.97 4 14 0.0025 0.12 13.3 1.3 1 23 592 614 592 614 0.98 5 14 0.0029 0.14 13.1 5.5 1 23 620 642 620 642 0.98 6 14 4.7e-05 0.0022 18.7 2.1 1 23 648 670 648 670 0.97 7 14 0.00081 0.037 14.8 2.3 2 23 682 704 681 704 0.96 8 14 0.0012 0.054 14.3 3.6 1 23 710 732 710 732 0.98 9 14 0.0003 0.014 16.2 1.9 2 23 739 760 738 760 0.97 10 14 0.013 0.62 11.0 3.3 1 23 766 788 766 788 0.99 11 14 1.2e-06 5.7e-05 23.7 3.6 1 23 794 816 794 816 0.99 12 14 6.7e-05 0.0031 18.3 3.1 1 23 822 844 822 844 0.98 13 14 0.00015 0.0069 17.2 3.0 1 23 850 872 850 872 0.99 14 14 0.21 9.8 7.2 8.5 1 23 878 901 878 901 0.98
Sequence Information
- Coding Sequence
- ATGCGTTGTTGTGTGCTTTTCTGCAAAAACACTTCCATCAATGTGTCCACATCAGAGAAGGGGATTAGTTTTCATGGTAACAACCTCGACTTCTGGGACGATGATAATATAGGACAGCAGTCATCATCATCACCGACACAACCTGAGGGTGGGAGGAATGAGGAACCGGTATCAGCACCCGTGTCGGCCGGCACGTCCGGCTCGTCTGTCGCGAGCGCTGCTGCCGAGACAAACGAGGATCCGCCCTTAGCACCCGTGTCGCCCGGCACGTCTGGCTCGGCTGTCACGAGCACCGCGGCCGAGACGCCCGCTACACCCGAAGCACCCGCCGCCGTGCCGTCACCTCCAGCGGACGACTCGCCTGACAGAGTGACAAGAACCCGAGGAGTACGGCGACCGCAGACATCCGAGGATGAGTTCTTCGAGTGTATAGAGAGTGATATTCGGAGGCCCTCTGCTCGAACTCGAAGGAGTCTCCCCAGTGATGTGCGTCTGCGTGCTGCTTGGCTCAGAGCCCTCGGCAAACAACACAGTCAGCTACCAGACTCTGCTGTGGTCTGCTCCCAGCATTTTCTTAATGATGAAATTTATGAAACCAAAAGTGGCTTAAGGCAGATTGCTACTGGTGCTGTTCCTTCAACAGTGCAGGTTTGCATGATATGCCTAGACACTGACAGCAAGCTGTATCCAATGAGTAAACACAAATTGGAAGAGGCATATGAAAGGTTAACAGGATATCCATTATGTGATCAGAGAAACCTAAAACATACAGTTTGCGTAAAATGTGCTCAAAGACTGATAAACTTTAGTAGATTCAGAGACAAGAGCTTGAGAGCCCGTGCACTGATGATGGACTTAGTTGAAAAACATGAATTTATAACAAGGCGACATATAAAAGGGATAAACCGCACAAAGAACCAACTAAGCTGTGATTTTGTGGTAACAAAGCTATTACCTGACCACTGTGACTTATACGTACAAGACTCCTCAGAAGACAAAAAGACAGAATCTGAGCCAATCAAATGTAATGTTTTAGTGAAAGTTGAAGAAAGTTATGACCCTATGTCGATTGATGAAGATATTCAAGTGACAAATGAAGACGAGAATAATGGGAACTATATAAGTGATGAATTTTTTGTATCTAAGGAGGAATTGTTATCCGACAACGAGATAGTGTTGGACATAAAACAAGAGGATGAAATGCCAGATCCGTTAAACTATGAAAGTACTGCCTTCAAATGTTGTCTCTGTTTTTCGGAGTTTGTCGGTGAACATGCATATATGCAACATATGCGCATGCATGACCAGAACAGTGACGGTTATGCTGACTGTGGCACGTCTCAAGTATGCAAGCCTCATACAGCCGTGAGCTCCTCACACTCTCCACACCTCACTGAGAACAAGCAGACCATTCCGCTGAGCCAGGCCCCGAGCCCGTCCACACACTCATCTCAAACTGCAGTCGCTCCTCTGTACGCGAGACTTGCGACGAATAACGGAAACAAATTGCAAGCTGAAGACGCCGATACAGTCCAGGAGAGTTTCCAAGCGAGTGATTGTAATCTATTGATCCCTATACAAACTCAAACAGATAAAAAAATTGTAAAAAAATGTAATTTGTGCGTATTCACAACCACTCGAAAATCCTATTTAACGAAACACATTAAAGTTCACACTGATAATAAGCCCTTGTCTTGTAAGTTATGCAAATACAAATGTTCAATAAAAAGGTCATTAGAAACACATATGAGAACTCATACAGGTGAAAAACCGTTTATGTGCGATTCGTGCGAGTATAAAACTGCTAGTAAAATTCATTTAATACGTCACATTAAGATTCACTCTGGTAAAAAACCTCATACTTGCAAGCTATGCTCATTTAGTTGTGTACAATCAGGTCAGTTATCAAGTCACATGAGACGGCACACTGGTGAGAAACCCTTTGCATGCGAGTTGTGCGATTTCAAAACTTCTCAGAGAACTAATTTAAGGAAACACATGAGAAACCACTCTGGTGGCCTTCAAAAGCCTTTGCCAAACCTTACTTGCAAATTCTGTCCGTACAGGTGTGCGCAAAAGGGCAATTTAGTTAATCACATCAAGAGAACTCACACCGATGAAAAACCTTTCATCTGTGAGATATGTGACTACAAGTGTGCACTAAAATGTGACTTAGTGCGACACATGAAAACACACATTCATGAAAAATATATCTCTTGCGAGTTATGCGACTACAAATGTGCAGATCGTAGATATTTAGAGAACCACATGAGAAAACACACAGGTGAGAAACCATATACATGCAAGTTATGCGTGTACAAATGCTCACTAATGGGTACGCTCAAAAACCACATAAGAACTCACACTGGTGAAAAACCATATTCGTGCAAGATATGTGACTACAAATGTTCACAGAGTGGTAACTTGACGAGCCACATGAGAACTCACACCGGTGAAAAACCTTTTACTTGCGAGTTATGCGACTATAAATGTACATATAATTCTACTCTAGTGACCCACATGAGAGTTCACACTGGTGAAAAACCTTTCACTTGCAAGTTATGTGACTACAAATGTGCGGTTAGATCGACTCTAGTGAGCCACATGAGGACTCACACGGGTGAAAAACGTTATACTTGCAAGTTATGTGACTTCAAATGTGCACATAAATGTACTCTAGTGAGTCACATTAAGAGAACTCACACTGAGAAAAATCCTCCATCATAG
- Protein Sequence
- MRCCVLFCKNTSINVSTSEKGISFHGNNLDFWDDDNIGQQSSSSPTQPEGGRNEEPVSAPVSAGTSGSSVASAAAETNEDPPLAPVSPGTSGSAVTSTAAETPATPEAPAAVPSPPADDSPDRVTRTRGVRRPQTSEDEFFECIESDIRRPSARTRRSLPSDVRLRAAWLRALGKQHSQLPDSAVVCSQHFLNDEIYETKSGLRQIATGAVPSTVQVCMICLDTDSKLYPMSKHKLEEAYERLTGYPLCDQRNLKHTVCVKCAQRLINFSRFRDKSLRARALMMDLVEKHEFITRRHIKGINRTKNQLSCDFVVTKLLPDHCDLYVQDSSEDKKTESEPIKCNVLVKVEESYDPMSIDEDIQVTNEDENNGNYISDEFFVSKEELLSDNEIVLDIKQEDEMPDPLNYESTAFKCCLCFSEFVGEHAYMQHMRMHDQNSDGYADCGTSQVCKPHTAVSSSHSPHLTENKQTIPLSQAPSPSTHSSQTAVAPLYARLATNNGNKLQAEDADTVQESFQASDCNLLIPIQTQTDKKIVKKCNLCVFTTTRKSYLTKHIKVHTDNKPLSCKLCKYKCSIKRSLETHMRTHTGEKPFMCDSCEYKTASKIHLIRHIKIHSGKKPHTCKLCSFSCVQSGQLSSHMRRHTGEKPFACELCDFKTSQRTNLRKHMRNHSGGLQKPLPNLTCKFCPYRCAQKGNLVNHIKRTHTDEKPFICEICDYKCALKCDLVRHMKTHIHEKYISCELCDYKCADRRYLENHMRKHTGEKPYTCKLCVYKCSLMGTLKNHIRTHTGEKPYSCKICDYKCSQSGNLTSHMRTHTGEKPFTCELCDYKCTYNSTLVTHMRVHTGEKPFTCKLCDYKCAVRSTLVSHMRTHTGEKRYTCKLCDFKCAHKCTLVSHIKRTHTEKNPPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -