Mjur016736.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995220.1:10430237-10446089[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00014 0.0065 17.2 1.6 1 23 354 377 354 377 0.95 2 13 2.6e-05 0.0012 19.5 1.9 1 23 380 402 380 402 0.98 3 13 7.1e-06 0.00033 21.3 1.0 1 23 407 429 407 429 0.98 4 13 0.013 0.61 11.0 1.3 1 23 435 457 435 457 0.95 5 13 1e-05 0.00047 20.8 1.6 1 23 464 487 464 487 0.97 6 13 3.7e-05 0.0017 19.1 0.7 1 23 493 515 493 515 0.99 7 13 0.061 2.8 8.9 3.2 1 23 521 543 521 544 0.94 8 13 0.0015 0.07 14.0 1.9 1 20 549 568 549 571 0.91 9 13 0.007 0.32 11.9 4.5 1 23 577 599 577 599 0.98 10 13 0.00021 0.0097 16.7 0.5 1 23 612 635 612 635 0.96 11 13 2.8 1.3e+02 3.7 1.7 2 23 644 662 643 662 0.84 12 13 0.00062 0.029 15.2 0.5 2 23 668 690 667 690 0.95 13 13 0.0027 0.12 13.2 1.2 1 23 695 718 695 718 0.96
Sequence Information
- Coding Sequence
- ATGTCTGAAATATTCAACCTAAGTGAACTATGCAGGTGTTGCCACTCAGATGGCAGCTTTAAGAGTCTGAATCTATGTTATAGTTTTAAGGGACAAGTGGAAGTATATGCAAATATGCTCCATGAAACTTTTGGATTAATTCTGCAGCAACCATCTATAGAAGCAAGCTACTCAATATGTGATATATGTATAATAAAGTTAAGACATGCATTACAATTCAAGAGACAAGTACAAGAATGTGAAATGAAGTTTGAAGATTATTGCAAAAATCTCAGCGACGAGAGTCAGCGTAATGAAGACACAAATGCGGATCATTCAGGTGTAGAAGTATCTAATTATGACTGTATAGGCAATAACGAAGAGGAAATAATTAACACTGAGTATCAGCTAAATGAATGTTTGAAAAAGCAACAATCTGATATAGCAAATGCTGAAATTCAACGCAATGGCTGCTTAGAAAAACGAACGTTAAAAGTGAGGATTATTCAGAATAATGTAATAAAGGAGAAATCAAATGAACCAGATCTTAGTGACGAGAGTCAGTATAGTGAAGATAGAAACGTGGATTATGCAGATTTAGAAGTATCTAGTCATGGCTATATAGGCGATAACAAAGAGAAAACAGTAAGCACTGAGTATCAGCTAAATAAATGTTTGGAAAAGCAACAAATCAATACAGCAAGTACTGAAATTCAACACAACAACTTAGAAAGAGAAAAAACAGTTAAAACTAAATCAAAAATTCAACAAAAGAGAACTTTAAAAAATCAAAAATCGGGTGTATCAAAAGTGAAGAGCAAACAGAAGAATGTAGTAAAGGAAAGAAGAAAAAAAACAGTTAAAACTAAATCAAAAATTCAACAAAAAGGAAGTTTAAAAAATCAAAAATCAGTTTATCAAATTGATATATCAAAAGTGAAGAGCAAACAGAAGAATGTAGTAAAGGAAAAATCGAATGAACCAGATAATTCCAAAGGTGAAACATCAGATGTATCAAAAGTGAAGATAAAACAGAAGAACATAGTAAAAGAAAAATCGAATTCCACAAATCGCAAAGTTTACCTTTGCCAAACTTGCAATGGTAGCTTTAAAACCTCAGCAAACCTAAGAGAACACCAAAAGAAACAACATTCTTCATTTCGTTGTAGAGTTTGTAAAAAAAACTTTAATACAAAGGAAGCATTAACAATACACAGACTTACACATAGATATGATATCTTTGAATGTGATATCTGTGGCAAAAGGTATCCGTTGCGATCGACTTTGAAAACGCATAGGAACACACACACAAAAGAAAAGGTTTTCACATGTGATATGTGTAATAAAGATCTCCTATCTAAATCCTCATTGAGAAAACATATAGACTTCCATTTGGGTAAAAACAAGAAATTCATGTGCGACTTATGTGGACACTCATTCAACGACAAGACCAATTTTAACATACACATCCGTAACGTCCACGAGAAACTGAGACTGTTCAAATGCGACCAGTGTCCTAAAGCATACGCTTCTGTTAAATATTTGAGAATACATTTAAGGAAACACACCGGTGAGCGTCCGTATCAATGTCAACTTTGTGGCGAATCGTTTGCGTGCTATTCTCGCTTAAGAGAGCATACAGATATCCACCATTCTAAAATCACTTATGATTGCAAAGTCTGCGGGAAACATTTCAAGAGTCGGAAAGCTCTTGGTTCTCACACCTGGACACACACTCGTGTCAAACCTTTCAAATGTGATTATTGCGACCTAGATTTCTCATGTTCATTTTCTCTAAACCGCCATGTCAAGAGGCATGTCGACGCCCGCGAGGGACGCCATAAAGAGAAAATCTTCTCTTGCGAAATATGCCTTAAAAAATTTGCTGAAAAAGCGTTTTTGAATAAACATATGAAAGCCATTCACGGCCCGAATACTAAAGTGAAAATGAAGTGTACTTTGTGCAAAATCTCCGTACGCAATATGGAGAAACATATGAAGACACATACGGACAGGACTCTTCAGTGCAGCGCTTGCCCTAGAACATATTCCGATAATAGGGCCTTGAATCGGCACTTCAGACAAATTCACTGTGGTATAACTTACGATTGTGACCTTTGCGATAAAAAGTATGTAGCACTGAAAAATTTACGAAATCATAAATTGAAGAAACACAACACACATACACAGTTCAAAGTGGAGCAGGAAGATTCGAATGTAATAGAAAATGAAATAATTTAG
- Protein Sequence
- MSEIFNLSELCRCCHSDGSFKSLNLCYSFKGQVEVYANMLHETFGLILQQPSIEASYSICDICIIKLRHALQFKRQVQECEMKFEDYCKNLSDESQRNEDTNADHSGVEVSNYDCIGNNEEEIINTEYQLNECLKKQQSDIANAEIQRNGCLEKRTLKVRIIQNNVIKEKSNEPDLSDESQYSEDRNVDYADLEVSSHGYIGDNKEKTVSTEYQLNKCLEKQQINTASTEIQHNNLEREKTVKTKSKIQQKRTLKNQKSGVSKVKSKQKNVVKERRKKTVKTKSKIQQKGSLKNQKSVYQIDISKVKSKQKNVVKEKSNEPDNSKGETSDVSKVKIKQKNIVKEKSNSTNRKVYLCQTCNGSFKTSANLREHQKKQHSSFRCRVCKKNFNTKEALTIHRLTHRYDIFECDICGKRYPLRSTLKTHRNTHTKEKVFTCDMCNKDLLSKSSLRKHIDFHLGKNKKFMCDLCGHSFNDKTNFNIHIRNVHEKLRLFKCDQCPKAYASVKYLRIHLRKHTGERPYQCQLCGESFACYSRLREHTDIHHSKITYDCKVCGKHFKSRKALGSHTWTHTRVKPFKCDYCDLDFSCSFSLNRHVKRHVDAREGRHKEKIFSCEICLKKFAEKAFLNKHMKAIHGPNTKVKMKCTLCKISVRNMEKHMKTHTDRTLQCSACPRTYSDNRALNRHFRQIHCGITYDCDLCDKKYVALKNLRNHKLKKHNTHTQFKVEQEDSNVIENEII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -