Mjur006516.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995233.1:2457036-2460374[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.01 0.46 11.4 0.9 1 23 78 101 78 101 0.92 2 20 0.34 16 6.6 0.1 2 23 128 150 127 150 0.93 3 20 2 92 4.2 6.9 2 23 173 194 172 194 0.97 4 20 0.52 24 6.0 0.0 1 23 198 220 198 220 0.92 5 20 1.1 53 4.9 2.2 1 19 225 243 225 245 0.86 6 20 0.038 1.8 9.6 1.6 2 23 256 278 255 278 0.92 7 20 0.00039 0.018 15.9 1.0 3 23 287 308 285 308 0.95 8 20 0.02 0.92 10.5 2.9 1 23 314 336 314 336 0.93 9 20 4e-05 0.0019 18.9 1.3 1 23 342 364 342 364 0.98 10 20 0.026 1.2 10.1 1.2 1 16 370 385 370 387 0.88 11 20 2.7 1.3e+02 3.7 1.2 1 23 449 472 449 472 0.90 12 20 0.0017 0.077 13.9 0.1 2 23 502 524 501 524 0.94 13 20 0.014 0.64 11.0 1.7 2 23 547 568 546 568 0.96 14 20 0.012 0.57 11.1 0.5 1 23 572 594 572 594 0.92 15 20 0.036 1.6 9.7 1.4 1 23 599 622 599 622 0.91 16 20 2.3 1e+02 4.0 1.9 2 23 630 652 629 652 0.95 17 20 0.00015 0.0068 17.2 5.7 2 23 660 681 660 682 0.95 18 20 6e-07 2.8e-05 24.7 1.6 1 23 688 710 688 710 0.98 19 20 2.9e-05 0.0014 19.4 1.0 1 23 716 738 716 738 0.98 20 20 0.001 0.047 14.5 2.3 1 23 744 767 744 767 0.98
Sequence Information
- Coding Sequence
- ATGTTGGAAAAAATACCCGAGCACGGAACCCTCAGTTCACGACGTCACAAAACAATTGAAATCTATATTGGAGAGTCGTCTAAAAACCCTAAAAGGGAGAGACCTAGAAGGATAGAGCCAGAGATAATATTTAATAAAAAGGGCGGAGAATTACAGAAACACCGGTTTAATCTGAGACAGATTTTGCTAAACACTAACGCAACTCCCATACGCTGTAGAGGCGGCATCGGCTATGCGTGCTGCTTTTGCACTGAACAATTTCCAGACGCGGCGGACTTAAAAAAGCACACGATCGAATTCCACGACGAAAAGACCAGCCTCAACTTCATGAAGGGCAAAGACATGTACAAGTTTCACGTCAAGCTTGATATAACAGCGCTCAAATGTAACATTTGTAACACAGACGTAGAAACTTTAGAACAAGTCATAGATCACTTGAAGGACGTTCATAATAAAGAAATGTTCACTGATATAAAGCATCAAATGTTGCCGTTTAAGTTTGATACTGAAAGGCTGCAATGTTGTATTTGTCATAACACTTACCACAAATTCAAGTCTCTGCTAGAGCACATGAATGTTCATTACCGGAATCATGTTTGCGAGGTGTGTGACGCCGGATTCGTCAGTCGCGTGATTCTCGCGCAGCATGCAGAGAGCCACAAACTCGGCACTTTCAACTGCGATTACTGTGCGAAAACCTTTGACACGTTCAGGAAGAAACGTTCTCACGAAAAGTGCATACATACCCATTCCGCTACATTAAACAAATGCGGGTATTGCAACGAGAAATTCAAAGACTACCGCAAGAAGGAAAGACATTTGACTGAAGTGCACGGAATAACTTCGCTGACATTGAACTGCCAAGCTTGCGACAAGACTTTTAACAACCAGAAGGAGTATTCGATACATTTGCGAAGGTTGCATTTGATGGATAAACGGTTCAAGTGTACAGAATGTGACATGTCCTTCTTTTCCTCGGCGGAGTTGAATTGTCACACGGTAAAGCATACGGGTGTGAGGAAGTTCGAGTGTGAAGTTTGCCACAAGGCGTATGGACGCATGAAGACTCTGCGTGAACATATGAGGATACATATGGACGATCGTCGATTTAAATGCGAGCATTGTGGACAAGCGTTCGTGCAAAAGTGCAGTATGACAGTCGCCAAATCAGAGAAACTAAGCGTAAAGGTTAAAGAAGAGAAGAGAAAAAAGACCAAAATACAGCTGGTTCCAGTCAAAAAGCTATCGGACATGCAATTAGATGTAAAAAAGCACCGAGATAACATAAAGCTCATACTTAAAAACTCAAACGCAACGCCGATCCTGGGTCATACAGACAGTGGCTATACGTGCTGCTTCTGTGAAGACAAGTACCCGGACCCCGCTGAAATGAAAAGACACAATTTAGAAACACATACACCGATGCTCGACACGCTAAACCTCCAGGCGTTAATACCGAAATTCGTGAGCATGCTTTGCATTAAACTGGATATAACAGCTCTGATGTGCACTATATGCAACAAAGAATTTGATACCATCGAGAAACTGATTGAACACTTGCAGAATATCCACGAGAAACCGTTCCACAAGGATATAACGCATCAAATGTTGACGTTCAAGTTCGATACCGAAGGACTACAGTGTTACATTTGCAAGAACACGTTTAACAAGTTTAAGAAGTTAATGGAACATATGAACGCGCATTACCGGAACTTTATCTGTGAGGTGTGCGACGCAGGTTTCGTGACTCAGAGGAAGCTGTACCATCATAAAGTGGCTCACAACACTGGGACGTTCACCTGCAGCCAATGCCCGAAGACTTTTCCAACTTTCATCAGGCAACGGGCTCATGAAAGGCAGTACCACGAATTGGGGATGCTCGTGAACAAGTGTCGTCTATGTAACGCCCTGTTTAAGAATAACAGACAGAAGGACAAGCATTTGGAGAAAGAGCATGGAGTGACGTCGTTCTCTAGGAAATGCCACGCTTGTGGAAAGATGTTCGTTCACCAGAACGCGTTGAATATCCACATGAAGAGACATCACTTGGTGGAACGAACGCACAAGTGTGATGAATGTGGGAAAGGTTTTTTCTCATCGACAGAGTTGAGAGCACATATGAACACTCATACAGGACGTAAGGAGCACCAGTGCGGTGTATGCTTGAAGAGCTATGCCAGGAAGTGGACGTTAAACGAGCATATGCGAATTCATATGGATGATCGTAGATTCAAATGTGAACTCTGCGAACAGGCGTTTGTCCAGAAGTGCAGTTGGCGTGGACATATGCGGTCCAAACACGGGGAGCAAGTTTGA
- Protein Sequence
- MLEKIPEHGTLSSRRHKTIEIYIGESSKNPKRERPRRIEPEIIFNKKGGELQKHRFNLRQILLNTNATPIRCRGGIGYACCFCTEQFPDAADLKKHTIEFHDEKTSLNFMKGKDMYKFHVKLDITALKCNICNTDVETLEQVIDHLKDVHNKEMFTDIKHQMLPFKFDTERLQCCICHNTYHKFKSLLEHMNVHYRNHVCEVCDAGFVSRVILAQHAESHKLGTFNCDYCAKTFDTFRKKRSHEKCIHTHSATLNKCGYCNEKFKDYRKKERHLTEVHGITSLTLNCQACDKTFNNQKEYSIHLRRLHLMDKRFKCTECDMSFFSSAELNCHTVKHTGVRKFECEVCHKAYGRMKTLREHMRIHMDDRRFKCEHCGQAFVQKCSMTVAKSEKLSVKVKEEKRKKTKIQLVPVKKLSDMQLDVKKHRDNIKLILKNSNATPILGHTDSGYTCCFCEDKYPDPAEMKRHNLETHTPMLDTLNLQALIPKFVSMLCIKLDITALMCTICNKEFDTIEKLIEHLQNIHEKPFHKDITHQMLTFKFDTEGLQCYICKNTFNKFKKLMEHMNAHYRNFICEVCDAGFVTQRKLYHHKVAHNTGTFTCSQCPKTFPTFIRQRAHERQYHELGMLVNKCRLCNALFKNNRQKDKHLEKEHGVTSFSRKCHACGKMFVHQNALNIHMKRHHLVERTHKCDECGKGFFSSTELRAHMNTHTGRKEHQCGVCLKSYARKWTLNEHMRIHMDDRRFKCELCEQAFVQKCSWRGHMRSKHGEQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -