Mjur007179.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995233.1:2071751-2075237[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 7.1e-06 0.00033 21.3 0.4 1 23 370 392 370 392 0.98 2 10 2.5e-05 0.0012 19.6 3.4 1 23 426 448 426 448 0.98 3 10 4.5e-05 0.0021 18.8 3.5 1 23 454 476 454 476 0.98 4 10 0.00032 0.015 16.1 5.2 1 23 482 504 482 504 0.97 5 10 0.00027 0.013 16.3 2.5 1 23 510 532 510 532 0.98 6 10 8.4e-05 0.0039 17.9 5.1 1 23 538 560 538 560 0.98 7 10 0.00013 0.006 17.3 3.4 1 23 566 588 566 588 0.98 8 10 1.8e-05 0.00083 20.0 3.1 1 23 594 616 594 616 0.98 9 10 5.9e-05 0.0027 18.4 3.2 1 23 622 644 622 644 0.98 10 10 5.2e-05 0.0024 18.6 4.2 1 23 650 672 650 672 0.98
Sequence Information
- Coding Sequence
- ATGCGGTGCTGTGTGCCCTTCTGCAAAACCACGGCGGAGGTCGTCTCCGAATCCGAGGAGATTACATTTCATTTACGAGCAGAGCTATTTGCGTTTTGTTTAACTAAGAGTCGCACGTTACGGAAGCTCCGTGTCAAAGTACAGGATGTAATTTCCAGGTTCCCCAGAGAAGTGCATCTCCGTGCTGCTTGGCTCAGAGCCCTCGGCAAACAAGACACTCTCCTGCCAGAGCCTGCTGTGGTCTGCTCGCAGCATTTTCTGAACGATGACATTTATGAAACAGAAAGTGGCTCAAGGCAGATTCATACTGGCGCTGTCCCCTCACCAGTGCTGGTCTGCATGATATGCCTGGACACTCGCAGCAAGCTGTTTCTGATGAGTAAATACCAGTTGGAAGAAGCATATGAACATTTAGTGGGACATCCTTTGTGTGGTCAAGGAAAGCTCAAACAAACGCTTTGTGTGCAATGTGCCCAGAGACTGGTGAACTTTAGCGCATTCAGAGACAAGAGCTTGAGAGCGCGCTCCCTGATGATGGAGCTACTTGACAGACATGAAGTGATAACTATACGACATGTCAAATTGATAAGCCGCGTAAAATACCAACTACAGTCCGACATTGTCTCGGCGGTGTCGGAGCCCGACTACTGCGATGTGTACATAGCACACTCCGACGCGGACGGAGGGACAGAACTAGACGCGACTGCCGCAACTGACGAAGCAGTTGCAGTCAAACGGGAAGCCGAGCCAGCCGCCGCCCAAACAGAGTTATATCCTTTCAGCCACATGATTCCCAAGCCGGAGTCGTCGGGGGACTGCGAGCAAGCTTCGGTCGCTCCTTCGGTACTCGCGACCAATCACGGAAACGAAGAACATCCGACTGATACAGACGACGAGTTGGATATATTGTCTTTTGAAAATAATACAAACATTTTTGTATATTCAGGGAAATCCCAGGACCCCTTACTAAAACTGAAGGAATCGTTGGCGAAAATAAGTGATAATATCAATTTGCGAACAGCGAGGCCAAATGTTCTTTTGAAAAACGAACACAATTCCCAGGATATATCCAGTACACAGTTAGGAAACTATACTGACCAGATACAGTATATCTGTGACGTGTGCCAAAAGATATTTCAACGGAAAAGTTCCTTAGTTACTCACATTAGGGCGCACACTTACGCAAACACTTTCTCATGTAAGTTAAGAGAGCGCAAATTCACTCAAAGTAGTACGTCATCGAGCCCCAGGAGGACTCACACTAGCGATAAGCCTTTCGTGTGCAAGTTGTGCAATTATAAATGTACAGAAAATAGTAATTTAGTGAGTCACATGAGGACTCACACTGGCGAAAAGCCTTTCGCTTGTAAGTTATGTAAATACAAATGTACACAAAATGGTAATTTAGTGAGTCACATGAGGACTCACACTGGCGAAAAACCTTTCGCTTGTAAGTTATGTAAATACAAATGTACAGTAAGCAGTCATTTAGTGAAGCACATGAGGATACACACTGGCGAAAAACCTTTCGCTTGTAAGTTGTGTGATTATAAATGTACAGTAAACAATAGTTTAGTGAGTCACATGAGGACTCACACTGGCGAAAAGCCTTTCGTGTGCAAGTTGTGCAATTATAAATGTACAGTAAATAGTCATTTAGTGAAGCACATGAGGATACACACTGGCGAAAAACCTTTCGCTTGTAAGTTATGTAAATACAAATGTACACAAAATGGTAGTTTAGTGAGTCACATGAGGACTCACACTGGCGATAAGCCTTTCGTGTGTAAGTTGTGCAATTATAAATGTTCAGTAAACAGTAATTTAGTGAGTCACATGAGGACTCACACTGGCGATAAGCCTTTTGTGTGTAAGTTGTGCAATTATAAATGTACAGTAAACAGTAGTTTAGTGAGTCACATGAGGACTCACACTGGCGAAAAACCTTTCGCTTGTAAGTTATGTAAATATAAATGTACAGAAAATAGTAATTTAGTGAAGCACATGAGGACTCACACTGGCTAA
- Protein Sequence
- MRCCVPFCKTTAEVVSESEEITFHLRAELFAFCLTKSRTLRKLRVKVQDVISRFPREVHLRAAWLRALGKQDTLLPEPAVVCSQHFLNDDIYETESGSRQIHTGAVPSPVLVCMICLDTRSKLFLMSKYQLEEAYEHLVGHPLCGQGKLKQTLCVQCAQRLVNFSAFRDKSLRARSLMMELLDRHEVITIRHVKLISRVKYQLQSDIVSAVSEPDYCDVYIAHSDADGGTELDATAATDEAVAVKREAEPAAAQTELYPFSHMIPKPESSGDCEQASVAPSVLATNHGNEEHPTDTDDELDILSFENNTNIFVYSGKSQDPLLKLKESLAKISDNINLRTARPNVLLKNEHNSQDISSTQLGNYTDQIQYICDVCQKIFQRKSSLVTHIRAHTYANTFSCKLRERKFTQSSTSSSPRRTHTSDKPFVCKLCNYKCTENSNLVSHMRTHTGEKPFACKLCKYKCTQNGNLVSHMRTHTGEKPFACKLCKYKCTVSSHLVKHMRIHTGEKPFACKLCDYKCTVNNSLVSHMRTHTGEKPFVCKLCNYKCTVNSHLVKHMRIHTGEKPFACKLCKYKCTQNGSLVSHMRTHTGDKPFVCKLCNYKCSVNSNLVSHMRTHTGDKPFVCKLCNYKCTVNSSLVSHMRTHTGEKPFACKLCKYKCTENSNLVKHMRTHTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00954850;
- 90% Identity
- -
- 80% Identity
- -