Mjur006850.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995233.1:2470323-2477451[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.029 1.3 10.0 1.4 1 23 110 133 110 133 0.97 2 19 0.038 1.8 9.6 0.1 2 23 161 183 160 183 0.95 3 19 0.3 14 6.8 0.8 2 23 206 227 205 227 0.96 4 19 0.072 3.3 8.7 1.2 1 23 231 253 231 253 0.96 5 19 0.065 3 8.8 0.7 1 13 258 270 258 281 0.84 6 19 0.3 14 6.8 0.7 2 23 289 311 288 311 0.90 7 19 0.0023 0.11 13.4 0.9 2 23 319 341 319 341 0.93 8 19 0.00013 0.0061 17.3 0.9 1 23 347 369 347 369 0.98 9 19 0.0042 0.19 12.6 2.3 1 23 375 397 375 397 0.99 10 19 4.8e-05 0.0022 18.7 1.8 1 23 403 426 403 426 0.98 11 19 0.16 7.6 7.6 0.2 1 23 507 530 507 530 0.94 12 19 8.7 4e+02 2.2 0.1 2 23 555 577 554 577 0.92 13 19 0.011 0.5 11.3 1.9 2 23 600 621 599 621 0.97 14 19 0.001 0.048 14.5 0.0 1 23 625 647 625 647 0.98 15 19 0.0098 0.45 11.4 0.3 1 23 652 675 652 675 0.95 16 19 0.063 2.9 8.9 0.5 2 23 683 705 682 705 0.93 17 19 2.5e-05 0.0012 19.6 3.0 1 23 712 735 712 735 0.97 18 19 0.00094 0.043 14.6 1.1 2 23 742 763 741 763 0.97 19 19 2.9e-05 0.0013 19.4 4.1 1 23 769 791 769 791 0.97
Sequence Information
- Coding Sequence
- ATGGTACGCGCTACGTCTACGCTTACGCAACACTTACGCAGCCTGTGTGAACGAGAGTCAGGTAATCAACGGTTGGTCATCAAAAGTGAAAGGACCGACACGCCCACGGAGATTAATATTAACGATGAAGTCAAGAAGATGGCTAAAAAAACTAAAACCACTGTAGTTAATTTACCTAAGATACGCTACATCACTATTGTGAGAGGACTGTCCAAGAGTATTACAAATTCTGTTAAAATTTCCGAAAAGGGTAAACATAGTAATAATTTTGAAGTTGTATTAGCACATTCGAATGCAACGCCGATTCGGAGTCATGACGGATTCGCCTATTCCTGTTGCTTTTGTGCGGAGCAGTATGTGAATCCGGCGGACTTAAAAACCCATACTTTGACGAAACACAACACCACCCGTGACAGACAAGGGTACATGAAGAAACAAACCTCGAACGGATACGCACTCAAGCTTGATATAACACAGTTGAAGTGTAACGAATGTGACCAAAGTATTGACACTTTAGAAGGGTTGTTGGACCATTTGCAAAACGAGCACAAAAAACTTATCTACACGGATATAAAGAACCAGATTATACCATTCAAATTTGACGGTGGAGACCTTCGATGTGTCATGTGCCCTGTCGTGTTCAGCAAATTCAAAATTCTCTTAGAACACATGCACACGCATTACAGAAATTATGTCTGTGAAATCTGTGACTACGGCTGTTTTAACCGTAGAGCGATGTTAAACCACAAGGGGACACATAAAACTGGATCCTTCGAATGCAGCAAATGCAACAAAGTCTTCGCTACACACCAGAGACGGTTAGCGCACGATAATTCTGTCCACAGATACATGAACAAACCTAACAAGTGCGGGATCTGTAATGAAAGATTCAAAAGCATCCAAATGAAGGACCAACACATGATCAACACGCACGGAATGTCGCCTGTGATTCGCAAATGTTTGGCCTGTGACGAAACTTTCACAAGCCAGTACTCGTTGCGGATACACAATCAAAGGTATCATATGATGGAAAGGCGTTTCCCATGTAAGGAGTGCGACATGAAATTTTATACCGGAGGGCAGTTAAAATACCATATGTTGAAGCATACGGGGCGGAAGGATTTCCAGTGCGACGTTTGCTTGAAGTGGTTCACGAGGAAGTGCGTTTTGCGCGAGCATATGCGCATTCATACAAACGACAGGCGGTTCACTTGTCTGCAGTGCGGTCGGGGGTTCGTGCAGAAGTGCAGCTTGCGTGGTCACATGCGATCGGTGCATGGAGAGGGTCTCAATCGGCAAAAAGCCGTCTTTACCGGAGACAGGGCTGACAAAATCCTTCGCGAACAAGACTCGAGCATAGGTGTTAAAGTTGGGAAAAAGAACCACAAAGGTACTAAGCGAAATAATCAGAGTTTAAGAACTACACGCGTTCAAGAAGTTGAGAAGCATAGAAATAATTTGCTAGAGGTATTGCTGAATTCTAACGCTACTATGATTAGACACCGAGGAGACCAGGGCTACGTATGTAGCTTCTGCACTGAACAATACCCTTTGGCGGCGGATTTGAAAATGCATACACTACAAACCCACGACGAAGACGCACTGAGAAAAGTGATTCAGGACATGAGGATCTACACAACGAAACTAGACATAACATCGCTACAGTGTGAACTCTGCCAGAGCGATATGTCTACAATAGAACAACTAATGGAACACTTAATCAAAATACACAAGCGGAAAATATACAAAGATATAAAAAATCATATGATACCATTCAAGTTTAAAGGTGACGACGTCAAATGCGCCATTTGCTCGGCCAAATGTTCCACATTTAGACTCTTAACTGTGCACATGAACAAACATTATAGGAATTACGTTTGCGACACCTGCGGTGCTGGATTCGTCAACCGGGACATTCTACGGGGTCATATGAGGATACACAAGACTGGGACCTTCAATTGTGACCTTTGCCCCAAAACCTTTGACACGCGACTCAAGAAATTGGCGCATATTAACGTGGTGCACAAAAAGGCGAGGATGACGCAAAAATGCGGGTACTGCAATGAAGCGTTTTCGGATTACCAAAAAAAGTTGGCGCATTTGTACCGCGAGCATGGCGTGAAGCTTCTAGAGTTTAAATGCGATGTTTGTGACAAAACGTATAACAGACATACGACTCTACGGAACCATGTAAGGAATGCCCATTTAAACGAGAGGGAGGTCAAATGCGCTGTGTGTGAGACTAAATTCTTCTCTCGGAACACTTTGAAGATGCATATGTTGACACACACGGGCCAGCGCGATCACCATTGCGAGTTATGTGGAAAAACCTTCGCGAGGAGGTTTACCCTAGACCAACACATGCGGGTGCATACGAAAGAAAGAAAACCATCGCCACAATACTTGATCATCGTGGAATCGGACGCTGAATCTGATCAGGAAAACTGCTTAGATTATTTAATGTAG
- Protein Sequence
- MVRATSTLTQHLRSLCERESGNQRLVIKSERTDTPTEININDEVKKMAKKTKTTVVNLPKIRYITIVRGLSKSITNSVKISEKGKHSNNFEVVLAHSNATPIRSHDGFAYSCCFCAEQYVNPADLKTHTLTKHNTTRDRQGYMKKQTSNGYALKLDITQLKCNECDQSIDTLEGLLDHLQNEHKKLIYTDIKNQIIPFKFDGGDLRCVMCPVVFSKFKILLEHMHTHYRNYVCEICDYGCFNRRAMLNHKGTHKTGSFECSKCNKVFATHQRRLAHDNSVHRYMNKPNKCGICNERFKSIQMKDQHMINTHGMSPVIRKCLACDETFTSQYSLRIHNQRYHMMERRFPCKECDMKFYTGGQLKYHMLKHTGRKDFQCDVCLKWFTRKCVLREHMRIHTNDRRFTCLQCGRGFVQKCSLRGHMRSVHGEGLNRQKAVFTGDRADKILREQDSSIGVKVGKKNHKGTKRNNQSLRTTRVQEVEKHRNNLLEVLLNSNATMIRHRGDQGYVCSFCTEQYPLAADLKMHTLQTHDEDALRKVIQDMRIYTTKLDITSLQCELCQSDMSTIEQLMEHLIKIHKRKIYKDIKNHMIPFKFKGDDVKCAICSAKCSTFRLLTVHMNKHYRNYVCDTCGAGFVNRDILRGHMRIHKTGTFNCDLCPKTFDTRLKKLAHINVVHKKARMTQKCGYCNEAFSDYQKKLAHLYREHGVKLLEFKCDVCDKTYNRHTTLRNHVRNAHLNEREVKCAVCETKFFSRNTLKMHMLTHTGQRDHHCELCGKTFARRFTLDQHMRVHTKERKPSPQYLIIVESDAESDQENCLDYLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -