Mjur006875.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- ZBTB8A
- Assembly
- GCA_905333055.1
- Location
- HG995233.1:6606421-6611036[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0068 0.31 11.9 3.2 1 23 10 32 10 32 0.98 2 16 1.8 85 4.3 0.4 3 23 105 125 103 125 0.89 3 16 0.00035 0.016 16.0 0.7 1 23 131 153 131 153 0.96 4 16 0.00011 0.0051 17.6 1.8 1 23 159 181 159 181 0.97 5 16 1.7e-07 7.7e-06 26.4 0.9 1 23 187 209 187 209 0.98 6 16 0.00026 0.012 16.4 0.7 3 23 302 322 301 322 0.98 7 16 0.023 1.1 10.2 0.2 1 23 328 350 328 350 0.97 8 16 0.002 0.09 13.6 0.9 1 23 354 376 354 376 0.98 9 16 0.00015 0.007 17.1 0.3 3 23 466 486 465 486 0.98 10 16 0.011 0.52 11.2 0.3 1 23 492 514 492 514 0.97 11 16 0.0067 0.31 12.0 0.9 1 23 518 540 518 540 0.98 12 16 0.00084 0.039 14.8 6.7 1 23 546 568 546 568 0.98 13 16 0.0039 0.18 12.7 0.6 1 23 578 600 578 600 0.98 14 16 1.7 78 4.4 1.2 3 23 608 628 606 628 0.94 15 16 0.02 0.95 10.4 0.2 3 23 636 656 634 656 0.98 16 16 1.2e-05 0.00057 20.6 2.9 1 23 662 684 662 684 0.98
Sequence Information
- Coding Sequence
- ATGAAATCCCACACCGGTGAAAAGCCATTTACATGCGAGTTGTGCGAGTACAAAAGTATACGGAAATGTAACCTGGCGTATCACATGACCACGCATACGAGGGACAAGCCGTTCACATGCGAGATATTCTCTCGCGTGAATGCGCCCGTGAAAATTGCTACAAATCCCATGAAAGAAATATGCATCGAACGTGAACACAAAGTCGTTCAAACCACGCAGAATAATCCTCAGGAAGCGTTCTTCAACAAGTTAAATAAATCCAAAACCAATGAAAGTGTAACAGTTACTAAGTCTGATAACAAGCAAATGAAATGTATTTTTTGCCAGTACCAAAGTAAAAACGGAGCTCTACTAGTCGACCATATGAAAACACACACTGGAGACAAACCGTTTGCGTGTGTGCTTTGCGAATACAAGTGTGCGAGAAAAAGTGATCTGGTGAAGCATATGATCATTCACACCGAACTAAAACCTTTTTCATGCGACCTATGTGACTACAAATGTTCAAGAAACAGTGACTTATCCAAGCATGTAATAATTCACACTGGTATTAAACCATTCTCTTGTGAGATATGTGGTTATAGGTTTGCCAGAAAGAGGGATCTGGGGAGACACATGAGGACCCACACTGGTGAAAAACCATTTGCCTGTAGTTTTTTCGCTCCTTTGCCATGGGAACTTGCGACAGACACGACAGGCCTACAAGCAGTTTCTACTCCAACCATCGAACAAATTATTAAAAAGGAACCTCAAGAACGATCTGTACCAGAAAAGATTGTAAGTGAATTAGATTCTGAAATGAATGCAGACGTCGTATTGAAAAATATTTTATATCAAAATTTGGGAGTCCAGAATGAAAAGCAACGGCTATCGCCTGAAACTGGCACTGATATGAAATTATTATGCGAGTATTGTACCTACAAAACTAACCGTAAAGAGGCATTACAGCGACATATAAGAGGTCACACAGGTGCAAAACCTTACGCTTGCGAAGTTTGCGAATACCGAAGTGGAAGAAGGAGTGATATCTTGCGCCATACGAAAATTCACAATCACAAATTCTCCTGTGGATTATGCGCGTACAAAACTTCGCTTAATAGTAGCTTGATGAACCATATGAAGACGCACTCGCCTGAAAAACCATTCTCCTGTCTGTTCTTCGCTCCTTTGCCATGGGAACTTGCGACAGACACGACAGGCCTACAAGAAGTTTCCACCACAACCATCGAACAAATTATTAAAAAGGAACGATCTGTACCAGAAAAGATTGTAAGTGAATTAGATTCCGAAATGAATGCAGACGTCGTATTGAAAAATATTTTATATCAAAATTTGGGTGTACAGAATGAAAAGCAACAGCTATCGCCTGAAACTGGCACTGATAAGAAACTATTATGCGAGTATTGTCCCTACAAAACTAACCGTAACGAGGCGTTACAGCGACACATAAGAGGTCACACAGGTGAAAAACCTTACGCTTGCGAAATTTGCGAATACCGAAGTGGTAGAAGGAGTGATATCTTGCGCCATACGAGACTTCACAATCGCAAATTCTCCTGTGGATTATGCGCATACAAAACTGGTAAAAGGTCAAGTTTAAAAAGGCACCAGATGATTCACAGCGCGAGAAAACCGTTCTCTTGTGAGCTTTGCTTCTATGAATGCTCTAGAAATTGCGATTTGACGCGTCACATGAGAACTCACTTGAAGAAACGCTCCAACCAAAATCCCTTTTCTTGTAACCGATGCGCGTACAAAGCTTCAGGAAAAAATGATTTAAACATACACATGAGAACTCACGCTGGCGAAGGGAATCTGTTTTGCGAAGTGTGCAACCATAAGTTCTTGAAACGCAGGACTTTAGTGGGGCACATGGTGATTCACTCCGGTGAAAAACCGTTCTGGTGTGACTTATGCCAGTACAAAGGCGCCAGAAAAGATGATATACGAAGGCACATGTTGGTACACTTTGGGGAAAAATCCTTTTCTTGCGAGCTGTGCGACTACAAGTGTGCAAGAAAAGGGAATTTAACCCAGCACCTGAGAACTCACATTGGTTAA
- Protein Sequence
- MKSHTGEKPFTCELCEYKSIRKCNLAYHMTTHTRDKPFTCEIFSRVNAPVKIATNPMKEICIEREHKVVQTTQNNPQEAFFNKLNKSKTNESVTVTKSDNKQMKCIFCQYQSKNGALLVDHMKTHTGDKPFACVLCEYKCARKSDLVKHMIIHTELKPFSCDLCDYKCSRNSDLSKHVIIHTGIKPFSCEICGYRFARKRDLGRHMRTHTGEKPFACSFFAPLPWELATDTTGLQAVSTPTIEQIIKKEPQERSVPEKIVSELDSEMNADVVLKNILYQNLGVQNEKQRLSPETGTDMKLLCEYCTYKTNRKEALQRHIRGHTGAKPYACEVCEYRSGRRSDILRHTKIHNHKFSCGLCAYKTSLNSSLMNHMKTHSPEKPFSCLFFAPLPWELATDTTGLQEVSTTTIEQIIKKERSVPEKIVSELDSEMNADVVLKNILYQNLGVQNEKQQLSPETGTDKKLLCEYCPYKTNRNEALQRHIRGHTGEKPYACEICEYRSGRRSDILRHTRLHNRKFSCGLCAYKTGKRSSLKRHQMIHSARKPFSCELCFYECSRNCDLTRHMRTHLKKRSNQNPFSCNRCAYKASGKNDLNIHMRTHAGEGNLFCEVCNHKFLKRRTLVGHMVIHSGEKPFWCDLCQYKGARKDDIRRHMLVHFGEKSFSCELCDYKCARKGNLTQHLRTHIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -