Mjur006417.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995233.1:6052588-6058221[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.8 83 4.3 4.6 1 23 257 279 257 279 0.96 2 14 1.8e-05 0.00085 20.0 3.9 1 23 458 480 458 480 0.98 3 14 2.4e-05 0.0011 19.6 5.0 2 23 487 508 486 508 0.97 4 14 0.0018 0.084 13.7 1.8 1 23 514 536 514 536 0.99 5 14 0.0019 0.087 13.7 4.5 1 23 542 564 542 564 0.98 6 14 9e-05 0.0041 17.9 4.2 1 23 570 592 570 592 0.98 7 14 0.0029 0.13 13.1 3.6 1 23 598 620 598 620 0.98 8 14 9e-05 0.0041 17.9 4.2 1 23 626 648 626 648 0.98 9 14 0.00026 0.012 16.4 4.5 1 23 654 676 654 676 0.98 10 14 0.00012 0.0056 17.4 5.1 1 23 682 704 682 704 0.96 11 14 3.6e-06 0.00017 22.3 2.7 1 23 710 732 710 732 0.98 12 14 0.00065 0.03 15.1 0.8 1 23 738 760 738 760 0.98 13 14 5.2e-05 0.0024 18.6 5.6 1 23 766 788 766 788 0.99 14 14 0.00011 0.005 17.6 4.0 1 23 794 816 794 816 0.98
Sequence Information
- Coding Sequence
- ATGCGGTGTTGTGTGCCTTTCTGCAAAAGAACTTCCGACAATGTATCAACATCGGACGGAGAAGGGAAAGCGATCAGTTTTCATGGTTTTCCCCGTGAAATGCATCTCCGTACTGCCTGGCTTAGAGCCCTCGGCAAACAAGACGACCTTCCAGACTCTGCTGTGGTCTGCTCGCAACATTTTCTAAGTGATGACATTTATGAAACAGAAAGTGGCTCAAGGCAAATACGTGCCGTTGCTATTCCTTCCACAGTGCAGGTTTGCATGATATGCCTAGACACTGACAGCAAGCTGTTACTAATGAGTAAACTGAAATTGGATGAAGCATATGAGAAGTTAACCGGAGAGCCTTTGTGTGATCAAGGAAAACTAAAACAGACACTTTGCGTACAATGTGCTCAGAGATTGATAAACTTCAGTAGATTTAGAGACAAGAGCTTGAGAGCCCGTGCACTGATGATGGACTTAGTTGAGAAACATGAATTAATAACAAGACACCATATTACAATGATAAACCGCACAAAACACCAACTAACAAGTAATATGGTGGTGACATCGCTGGGCCCTGACCACTGTGAGTTACACATACTAGAACATCTCTCAGAAGACAACCAGGAAGAATCGGAGGAAAGCAGACTAGAAGGTATCATGAAAATTGAAGGAAATGATGAGTCCATGACGGCTGATGAAGACATGGAAATGGAGAATGAAGATGACAAAAATTTAATTGATTTTGTTGAGAATCCAGTAAAGTACCAAAGTGATCCCTTCCAATGTGCATGTTGTTGGGAGGAGTTTGTCCATGAACATGCGTACATGCAACATATGAGCAAGCATGTCCAGCAAGGTGACGGTGCTGGTGAATGTGAGACGTCACGAGAATGCAAGCCTCATACAGCTGTGAGCTCCAGCTCTGCACACTCTGCACTCAGCACTGAGAACAAGCTGGCAGACTTCAGCCCTTCTGCACATTCTACTCAAACCTTAGTCGCCCCCCTACCCGCGAGTCTTGCGACAAATAACGAGATACAAGTGCCCCCAACTGAAGAAGCCGATACAAACGTCAGTTGCCGCTACAACAGATTAACAGATTGTTTTGTCAAATTATACGATGTTTTCTCTAAGAAAGTTGTACCAAGACAAGACGGAAAAGCTGTTAGGTTTTGTGTGAGTCAGAACATTGCATCCAAAGATACAGGTTCTCAGGCAACAAGTGAGAATGAAGTCTCTACAACAGAATACGTTGGACCTGTCACGAATAAAGTAAAAGTAATCGAATCGAAAACTTTACAAAATAAAACTGATTGTTTGAAGAATGTCATTGATATACAATGTTTGTTACAGAGTAGTTCACACACGGAGGGAAAATGTTTCATTTGTGATATTTGTAGAAAAATGTTTAAACGAAAATGTCTCTTAGTTAAACACATAAAGACTCACGTTGAAGTAAGATGGCTCACTTGCAAGATTTGCCAGTACAAATGTAAATATCAAAGTGGTTTGAAGCGTCATATGAGAACCCACACGGGTGACAAGCCATATTCATGTGAGATATGCGAGTACAAGTGTTCACTAAGAAGTAGTATAATAACGCATATAAGAACTCACACGGGTGAAAAGCCATACTCCTGCAAGATATGTGAGTACAAATGTGCACATAGAACCAGTCTAATGCAGCATATGAGTATTCACACTGGTATAAAAAATTTCTCGTGTAAGTTATGCAATTACAAATGTGTACAAAATAGCACTCTAGTGACGCACATGAGAACTCACACGGGTGAAAAGCCATACTCCTGCAAGATATGTGAGTACAAATGTGCACATAGAATCAGTCTAATGCAGCATATGAGTATTCACACTGGTATAAAAAATTTCTCGTGTAAGTTATGCAATTACAAATGTGTACAAAATAGCACTCTAGTGACGCACATGAGAACTCACACAGGTGAAAAGCCATACTCCTGCAAGATATGTGAGTACAAATGTGCACATAGCACTAGTCTAATGCAGCATATGAGAATACACACTGGTATAAAAAAATTCTTGTGTAAGTTATGCGATTACAAATGTGCACATAATAGTAATCTAGTGACGCACATGAGAACCCACACAGGTGACAAGCCATATTCATGTGAGATATGCGAGTACAAGTGTTCACAAAGAAGTAATCTAATGCAGCATATGAGAATTCACACTGGTGAAAAGCCATATTCATGTGAGATATGCGAGTACAAATGTGCACAGGGTATTAGTCTAATGAAGCATATGAGAATTCACACTGGTATAAAACCTTTCACGTGTAAAATATGCCATTACAAATGTGTACAAAATGGCACTCTAGTGAGGCATATGAGAACTCACACGGGTGAAAAGCCATACTCCTGCAAGATATGCGAGTTCAAATGTGCACACAGTAGTAGTCTGATAAGGCATATGAGAGCTCACACTGCCGCTGGTGAAACGCCTTCATCAAGTTCGTGA
- Protein Sequence
- MRCCVPFCKRTSDNVSTSDGEGKAISFHGFPREMHLRTAWLRALGKQDDLPDSAVVCSQHFLSDDIYETESGSRQIRAVAIPSTVQVCMICLDTDSKLLLMSKLKLDEAYEKLTGEPLCDQGKLKQTLCVQCAQRLINFSRFRDKSLRARALMMDLVEKHELITRHHITMINRTKHQLTSNMVVTSLGPDHCELHILEHLSEDNQEESEESRLEGIMKIEGNDESMTADEDMEMENEDDKNLIDFVENPVKYQSDPFQCACCWEEFVHEHAYMQHMSKHVQQGDGAGECETSRECKPHTAVSSSSAHSALSTENKLADFSPSAHSTQTLVAPLPASLATNNEIQVPPTEEADTNVSCRYNRLTDCFVKLYDVFSKKVVPRQDGKAVRFCVSQNIASKDTGSQATSENEVSTTEYVGPVTNKVKVIESKTLQNKTDCLKNVIDIQCLLQSSSHTEGKCFICDICRKMFKRKCLLVKHIKTHVEVRWLTCKICQYKCKYQSGLKRHMRTHTGDKPYSCEICEYKCSLRSSIITHIRTHTGEKPYSCKICEYKCAHRTSLMQHMSIHTGIKNFSCKLCNYKCVQNSTLVTHMRTHTGEKPYSCKICEYKCAHRISLMQHMSIHTGIKNFSCKLCNYKCVQNSTLVTHMRTHTGEKPYSCKICEYKCAHSTSLMQHMRIHTGIKKFLCKLCDYKCAHNSNLVTHMRTHTGDKPYSCEICEYKCSQRSNLMQHMRIHTGEKPYSCEICEYKCAQGISLMKHMRIHTGIKPFTCKICHYKCVQNGTLVRHMRTHTGEKPYSCKICEFKCAHSSSLIRHMRAHTAAGETPSSSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00954578;
- 90% Identity
- iTF_00954578;
- 80% Identity
- iTF_00954578;