Mjur007237.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995233.1:2359694-2369016[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0036 0.17 12.8 1.3 1 23 117 140 117 140 0.97 2 15 0.022 1 10.3 4.5 2 23 147 168 146 168 0.96 3 15 0.065 3 8.8 0.6 3 23 175 196 174 196 0.92 4 15 1.7e-05 0.00081 20.1 0.9 1 23 202 224 202 224 0.98 5 15 2.7e-06 0.00012 22.6 1.2 1 23 230 252 230 252 0.97 6 15 7.3e-06 0.00034 21.3 1.0 1 23 258 281 258 281 0.97 7 15 0.0077 0.36 11.8 2.4 1 23 308 331 308 331 0.94 8 15 0.0019 0.087 13.7 1.0 3 23 368 389 367 389 0.93 9 15 0.0004 0.019 15.8 0.9 1 23 395 417 395 417 0.98 10 15 1.2e-06 5.7e-05 23.7 2.0 1 23 423 445 423 445 0.98 11 15 0.00017 0.0077 17.0 1.4 1 23 466 489 466 489 0.96 12 15 0.017 0.81 10.6 5.4 3 23 526 546 525 547 0.93 13 15 0.0018 0.081 13.8 0.2 1 23 553 575 553 575 0.98 14 15 2.8e-05 0.0013 19.5 3.7 1 23 581 603 581 603 0.98 15 15 0.00039 0.018 15.8 0.4 2 23 610 632 609 632 0.95
Sequence Information
- Coding Sequence
- ATGGGTTATCATCTGGTGTATCAATCTCCGTTCTGGAATCGAACCCGGGCCTCGTCGAACACAAGACGCATTTTGGCTCAAGCCCAGGCGACGGAGAACTTGGCTGCAGCAATTGTCATACTGGGGACTGCAACAAACCAAGCTGCTGCTAGGCTGGCTGCAGCAATTGAAAAGTTTGCTGCTGTATTTAGCAGGACAGCAGGAGGAGCAGGAGATGCAACGAGTGTTGCATTCCCCTCGAAAAAGAGATGTCGCACAAAACAGCTATCAGGATCAGAATCTGATGACTACATTCAAGGACTACCCGACGACTTCACGACTACCCTCGAAGACGACGGCACGACAACATACACCTGCAACATCTGCAGCAAAGCCTGGAAGAATCGGAACAATTTCAGCCAACACTATCGTCTAGTGCATCTTAAATTAAATTTGAAAAAATGCCGTCTTTGCGGCGCCAAATTCACTAGATCGAAATTAACCCACCATATGGAGAAGAAGCACGGAATTCCAGCGCCATCTTGCGGTGCGTGTGGAAGGAAATTCGGCAGAAAGTATCTCGTGTTAGAGCACCAAAAGTTCTTCCATTTGGGAGAATCTAAGCACCGATGTGACCTATGCGACAAGTTGTTTATCGATTCGGGTGCGCTGAATCAACACATGAACAAACATAAGCCGGAAAAACCATTCATATGTGACATATGTCAAAAAGGCTTTAAGGTGAAGGAGCATTTGCAAAGACACCTCATGATCCACAATAATGTGAAGCCATACGCTTGTCAGATGTGCGAGAAGACGTACGTTCAGAAAAGCAATTGGAAGACTCATATGATGATGCGCCATCCTAATACTGAGTTGGAGAGCCAACACGCGTTATACGTAGACTTCACAGAAACCCTTGACGAAGATGGCGAAAAACGTTTCACTTGCAACGTCTGCAGCAAACCTTTCAAGAAGCGGCAATTTTTTGCGCAACACTACAGCCAGGTGCATCTCAAGAAGCGACCAGAGTTGCGCAGCTGTCATCTTTGCGACATAAAAGTCAAAGGCCACTTACGGCCTTTCCACATGGCGGAGTGCCACGGAATTCCACTGCCATCTTGCGGCGCTTGTGGAAAAAAATTCGGCCAAAAGTCCCAAGTCTTGCGGCACCAAAAGTTCTACCATATGGGCGAATCGAAGTACCGATGTGAGCTGTGCGATTTGGGATTCTTTACCAGCTATAGACTTAAAGTCCACATGGTTAAACATAAGCCGGATAGACCTTTCAAATGTGAGTTATGTGAAAAGACTTTCAAACGGAAGAAGTCTTTGCAGACTCACATCATGGCACATGTCGGTAACGGGATATACGTAGACTTCACAGAAACAGTCGACGAGGACGGCGAAAAACGTTTCATTTGCAACGTTTGCAGCAAACCTTTCAAGAAGCGGGATTTGTTCGCGAGACACTACAAGTACATCCATCTCAAGATACGACCAGTGTTTCGCAGCTGCCATCTTTGCGACGTAAAAGTCAAAAAATACTTCTACTCTTTACATTTGGAGGAATGCCACGGAATACCGAGGCCATCTTGCGACGCGTGCGGAAAGAAATTTGCACGAAAGTGCCAAGTTTTGCGGCACCAAAAGTTCCATCATATGGGCGAAAGGAATTTCCAATGTGAGGTGTGCGATATGAGGTTCTTTGGTGCCGGCAGACTAAATGTACATATGGTTAAACATGAGCCGGATAGACCCTTCAAGTGTGAGTTTTGTAAAAAGGCTTTCAAGCGGAAGATGACCCTGAAGACTCACACCATGATACACACAGATACGAGGCGCAAAGTGTGTCAGATATGCCAGGCGGCTTTCGTGCAGCGCAGCAGTTTGATATACCACATGACGAAGAAACACCCCAATGCCGCTTTCCCAACCGGGAGCAGCAGCTAA
- Protein Sequence
- MGYHLVYQSPFWNRTRASSNTRRILAQAQATENLAAAIVILGTATNQAAARLAAAIEKFAAVFSRTAGGAGDATSVAFPSKKRCRTKQLSGSESDDYIQGLPDDFTTTLEDDGTTTYTCNICSKAWKNRNNFSQHYRLVHLKLNLKKCRLCGAKFTRSKLTHHMEKKHGIPAPSCGACGRKFGRKYLVLEHQKFFHLGESKHRCDLCDKLFIDSGALNQHMNKHKPEKPFICDICQKGFKVKEHLQRHLMIHNNVKPYACQMCEKTYVQKSNWKTHMMMRHPNTELESQHALYVDFTETLDEDGEKRFTCNVCSKPFKKRQFFAQHYSQVHLKKRPELRSCHLCDIKVKGHLRPFHMAECHGIPLPSCGACGKKFGQKSQVLRHQKFYHMGESKYRCELCDLGFFTSYRLKVHMVKHKPDRPFKCELCEKTFKRKKSLQTHIMAHVGNGIYVDFTETVDEDGEKRFICNVCSKPFKKRDLFARHYKYIHLKIRPVFRSCHLCDVKVKKYFYSLHLEECHGIPRPSCDACGKKFARKCQVLRHQKFHHMGERNFQCEVCDMRFFGAGRLNVHMVKHEPDRPFKCEFCKKAFKRKMTLKTHTMIHTDTRRKVCQICQAAFVQRSSLIYHMTKKHPNAAFPTGSSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -