Mjur011655.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Maniola jurtina
Gene Symbol
-
Assembly
GCA_905333055.1
Location
HG995236.1:5259368-5267123[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.13 5.9 7.9 0.4 6 23 277 294 277 294 0.98
2 14 4.5e-05 0.0021 18.8 1.2 1 23 401 423 401 423 0.99
3 14 3.4e-05 0.0016 19.2 2.2 1 23 429 451 429 451 0.98
4 14 0.00042 0.02 15.7 3.9 1 23 457 479 457 479 0.99
5 14 1.7e-06 7.6e-05 23.3 1.9 1 23 485 507 485 507 0.99
6 14 7e-06 0.00032 21.3 1.8 1 23 513 536 513 536 0.97
7 14 0.00039 0.018 15.8 3.8 2 23 543 564 542 564 0.97
8 14 0.00018 0.0082 16.9 3.6 1 23 570 592 570 592 0.99
9 14 9.2e-06 0.00042 21.0 1.7 1 23 598 620 598 620 0.98
10 14 0.00069 0.032 15.1 1.9 2 23 627 648 626 648 0.97
11 14 0.0046 0.21 12.5 2.4 1 23 654 676 654 676 0.97
12 14 3.7e-06 0.00017 22.2 3.4 1 23 682 704 682 704 0.99
13 14 0.0052 0.24 12.3 3.3 1 23 710 733 710 733 0.98
14 14 0.00041 0.019 15.8 0.4 1 23 739 761 739 761 0.97

Sequence Information

Coding Sequence
ATGCGTTGTTGTGTACCTTACTGCGAAAACACTTCCACCAATGTGTCCACATCAGAGTCGAAGGGGATTAGTTTTCACGGTCTCCCCAGTGATGTGTGTCTGCGCGCTGCTTGGCTCAGAGCCCTCGGCAAACAACACAGTCAGCTACCAGACTCTGCCGTGGTCTGCTCCCAGCATTTTCTTGATGATGAAATGTATGAAACAGAAAGTGGCTTAAGGCAGATTGCTACTGGTGCTGTTCCTTCAACAGTGCAGGTTTGCATGATATGCCTAGACACTGACAGCAAGCTGTATCCAATGAGTAAACACAAATTGGAAGAAGCATATGAAAGGTTAACAGGATATCCATTGTATGATCAAGGAAACCTGAAACAAACACTTTGTGTACAATGTGCTCAGAGACTGTTAAACTTTAGTAGATTCAGAGACAAGGGCTTGAGAGCCCGTGCACTGATGATGGACTTAGTTGAAAAACATGAATTAATAACAAGACAACATATAAAGATGATAAACCTCACAAAGAACCAACTAAACAGTGATCTTGTGGTGACAATGCTAGGACCTGATCACTGCGACTTGTACATACTGGACTCCTCAGACAAACAGACAGAATCAGAGCCAATACAATATGTTAGTGTGGTGAAAAATGAAGAAAGTTATGACTCGCCAGTTGATGAAGACATGGAAGTGGCAGAGGAAGATGACAATACTGCAGACAATGTCAATGAGGAATTCTTATCCGAAAGTGAGATAATAATGGAAGCGAAACAATTGGCTGAAATGCCAGATCCGTTAAAGTATGAAACTACTGCCTTCCTATACTCTCCTTGTTCCGAGGAGTTTGTCAGTGAACATGCGTACATGCAACATATGCGCATGCATGACCAGAAAGTTTGTGGAGATGCTGACTGTGGCACGTCTCAAGTATGCAAGCCTCACACAGCCGTGAGCTCCTCACACTCTCCACACCTCACTGAGAACAAGCAGACCATTCCGCTGAGCCAGGCCCCGAGCCCGTCCACACACTCATCTCAAACTGCAGTCGCTCCTCTGTCCGCGAGACTTGCGACGAATAACGGAAACAAAGTGCAAGCTGAAGACGCCGACACAGTCCAGAAGAGTAAACTATTTAAAATCAACAATGCGGAACTACACAAGAATTACTACAGTGAAGGTAGTTTACCAATTGAGAAAAATTGGTATACTTGTGATGTATGTAGAAATACGTATGATCGGAAAAGTCTATTAGTCAAACACATAAAGACTCACACTGACATAAAACCGTTCGCTTGCAACATTTGCCCATTCAAAACTAAATATAAATATAGTTTAACTACTCACATGCGAACTCACACAGGTGAAAAACTATTTACTTGCAAGCTATGCGATTACCAATGCGCATTCAATAGTAATTTTGTGCTACACATGAGAACTCACACGGGTGAAAAACCCTACACGTGTAAGTTGTGTGAATATAAATTTGCAAGAAATTATGATTTGATAAGGCATATGAAATCCCACACGGGTGAAAAGCCTTTCAATTGCGAGCTGTGCGAATACAAATTTTCCGATAAACGCAATTTAGTGAACCACATGAGAAGAACTCACACGGGTGATAAGTCTGTTAGTTGCACTCTATGCGAATATAAATGTGCGTCTAATAGTAATTTAGTGCATCACATGAAGACTCACAGCGCTTCGAGGTCGTATACATGTAAAATGTGCAACTATATATGCGCGCGAAGTAATCATCTGGTGGCGCACGTGAGAACTCACACGGGTGAGAAACCTTACGCTTGTAATGTATGCGAGTACAAATGTGCGCAAAATAGTAATTTATTGAGCCACATGAGAACCCACACGCGTGATAAGCCTGTTAGTTGCGAACTGTGCAAATACAAATGTGCGGATGAACGCACTTTAGTGAGGCACATGAGAACTCACACGCGTGGAAAATGTTTCGCTTGCGAGCTATGCGACTACAAATGTGCATCCAGTAGTAATTTTGTGTTCCACATGAGAACTCACACGGGTGAAAAACCCTACACGTGTAATTTGTGTGAATATAAATTTGCAAGAAACTGTGATTTAATAAGGCACATGAGAACTCACACGGGTGAAAAACCTTATAGCTGCGAGCTATGCAAATTCAAATGTGTGGACAAACGTAATTTAGTGAGCCACGTGAGAAGGACTCACTCTGGTGAAAAGCCTTTTAGCTGTGATTTATGCGAGATTAAATTTGCTTACAAATATCAGTTGGTAACTCACATGGGATCTCACACTGGTGAACGCCCGGGTGTCGACCTGAAGAGGAGCGGAGTGGAGACATGCTCCGCGGGCCAATCAGATTATTGA
Protein Sequence
MRCCVPYCENTSTNVSTSESKGISFHGLPSDVCLRAAWLRALGKQHSQLPDSAVVCSQHFLDDEMYETESGLRQIATGAVPSTVQVCMICLDTDSKLYPMSKHKLEEAYERLTGYPLYDQGNLKQTLCVQCAQRLLNFSRFRDKGLRARALMMDLVEKHELITRQHIKMINLTKNQLNSDLVVTMLGPDHCDLYILDSSDKQTESEPIQYVSVVKNEESYDSPVDEDMEVAEEDDNTADNVNEEFLSESEIIMEAKQLAEMPDPLKYETTAFLYSPCSEEFVSEHAYMQHMRMHDQKVCGDADCGTSQVCKPHTAVSSSHSPHLTENKQTIPLSQAPSPSTHSSQTAVAPLSARLATNNGNKVQAEDADTVQKSKLFKINNAELHKNYYSEGSLPIEKNWYTCDVCRNTYDRKSLLVKHIKTHTDIKPFACNICPFKTKYKYSLTTHMRTHTGEKLFTCKLCDYQCAFNSNFVLHMRTHTGEKPYTCKLCEYKFARNYDLIRHMKSHTGEKPFNCELCEYKFSDKRNLVNHMRRTHTGDKSVSCTLCEYKCASNSNLVHHMKTHSASRSYTCKMCNYICARSNHLVAHVRTHTGEKPYACNVCEYKCAQNSNLLSHMRTHTRDKPVSCELCKYKCADERTLVRHMRTHTRGKCFACELCDYKCASSSNFVFHMRTHTGEKPYTCNLCEYKFARNCDLIRHMRTHTGEKPYSCELCKFKCVDKRNLVSHVRRTHSGEKPFSCDLCEIKFAYKYQLVTHMGSHTGERPGVDLKRSGVETCSAGQSDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00954610;
90% Identity
iTF_00954604;
80% Identity
iTF_00954604;