Mjur012103.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995236.1:1318623-1322481[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.011 0.51 11.3 8.0 1 23 163 186 163 186 0.97 2 17 0.00064 0.03 15.2 6.0 1 23 192 214 192 214 0.98 3 17 0.00012 0.0055 17.5 5.6 1 23 220 242 220 242 0.98 4 17 0.0008 0.037 14.9 7.2 1 23 248 270 248 270 0.97 5 17 0.00036 0.017 15.9 8.3 1 23 276 298 276 298 0.97 6 17 6.1e-05 0.0028 18.4 4.8 1 23 304 326 304 326 0.98 7 17 0.00023 0.01 16.6 7.0 1 23 332 354 332 354 0.97 8 17 0.00042 0.019 15.8 8.6 1 23 360 382 360 382 0.97 9 17 0.00013 0.0058 17.4 5.6 1 23 388 410 388 410 0.97 10 17 0.00088 0.041 14.7 8.0 1 23 416 438 416 438 0.97 11 17 4.2e-05 0.0019 18.9 6.4 1 23 444 466 444 466 0.98 12 17 2.1e-05 0.00096 19.8 2.5 1 23 472 494 472 494 0.98 13 17 0.00062 0.028 15.2 7.7 1 23 500 522 500 522 0.97 14 17 0.00021 0.0098 16.7 7.3 1 23 528 550 528 550 0.98 15 17 0.029 1.3 10.0 5.9 1 23 556 578 556 578 0.97 16 17 0.0047 0.22 12.4 7.2 1 23 584 606 584 606 0.97 17 17 6.6e-05 0.0031 18.3 5.4 1 23 612 634 612 634 0.98
Sequence Information
- Coding Sequence
- ATGGAGCAACAAGCCACTGCATCTAAATGTGATGCAGACTACCTCATTGAACCTAAGGAGGAAATGTTGGATGACCCAGAGATTATTCTTGATGATGTCCAGGACTTGATTGTACCCAAAGACGAGTTATCCAACACTAGTCTACACTCTGACCCTGCAGATTCAGACCTTCAAATCTTCAGCATGTTAAAGCCCATTAAAATAGAAACAGTATTGAGTAAAGAAATTGCTGAGTTACAAAAAGTACTTAAATCATCGGGAGATACAAAAACAACGTTTTGCGACCCCAATGTAAATTCACTAGATATGAGGATACAAGTTAAACAGGAGCCTTCTCAAGTGATAGCAAGTTTGGACAGCAGCCATCCAGTCAATGACAAGCAAACAGTTACTTCCTCTAACAACCACACTTCACAAGATACTGGGATGAGTCCTAACTGTTCAAAAACCACCAAAATGAATCTAGATTTGCGTCTCAAAAACCGATTTGAATGTAACCATTGTCAGTACACTACTAACTATAAAGTTCACTTGATAAAACATTTACATACAAGACACAGTAGTACAAAACCACATTCATGCAAAGTTTGCAAATATAAATGTGCCACAAAATATTCATTAGTGTTGCATATGAGGACTCACACGGGAGAGAAACCTCATAAATGTAATCATTGTGACTACAAAAGTTCACAGTCAGGTACCCTAAAAAACCACATGAAAATTCACACTGGTGAGAAACCTCATAACTGTAAGCATTGTGACTATAAATGTTCGACCATAAGTGCTCTTAAGGTTCACCTGAGGACTCACACTGGAGAGAAACCTCATAACTGTAAGCATTGTGACTATAAATGTTCGACCAAGGGTGCGCTTAATTATCACATGAGGACTCACACAGGAGAGAAACCTTATAATTGTAAGCATTGTGACTACAAAAGTTCACAGTTAGGTACCCTAAAAAAACACATGAAAACTCACACTGGAGAGAAACCTCATGACTGTAAGCATTGTGACTATAAATGTACGACCATAAGTGCTCTTAAGGTTCACATGAGGACTCACACTGGAGAGAAACCTCATAACTGTAAGCATTGTGACAATAAATTTTCACGGTCATGTGATCTGAAAATCCACATAAGAACTCACACTGGAGAGAAACCTCATAACTGTAAGCATTGTGACTATAAGTCTTCAACCACAAGTGCTCTTAAGGTTCACATGAGAACTCACACGGGAGAGAAACCTCATAACTGTAAGCATTGTGACTATAAATGTTCAACCACATACGCTCTTAAGGTTCACATAAGAACTCACACTGGAGAGAAACCTTATAATTGTAAGCATTGTGACTATAAGTGTTCAACCACAAGTGGTCTTAAGGTTCACATGAGGACTCACACGGGAGAGAAACCTTATAACTGTAAGCATTGTGACTATAAATATGCCACCCCAGGTACTCTTAAGTATCACATGAAGATTCACACTGGAGAGAAACCTCATAACTGTAAGCATTGTGACTATAAATGTTCGACCATAAGTTCTCTTAAGGTTCACATGATGACTCACACAGGAGAGAAACCTTATAATTGTAAGCATTGTGAGTATAAATGTTCACAGTCAGGTACCCTAAAAAACCACATGAAAACTCACACTGGAGAGAAACCTCATAACTGTAAGCATTGTGACTATAAATGTTTGACCATAAGTGCTCTTGAGGTTCACATGAGGACTCACATGGGAGAGAAACCTTTTGATTGTTACCATTGTGACTATAAATGTTCGACCACAAGTGATCAAAAAAGACACATAAGAACTCACAGTGCAGAGAAACCTTATAACTGTAAGCATTGTGACTATAAATGTGCCACTTCAGGTGCTCTTAAGTATCACATGAGGACGCACACTGGCGATTAA
- Protein Sequence
- MEQQATASKCDADYLIEPKEEMLDDPEIILDDVQDLIVPKDELSNTSLHSDPADSDLQIFSMLKPIKIETVLSKEIAELQKVLKSSGDTKTTFCDPNVNSLDMRIQVKQEPSQVIASLDSSHPVNDKQTVTSSNNHTSQDTGMSPNCSKTTKMNLDLRLKNRFECNHCQYTTNYKVHLIKHLHTRHSSTKPHSCKVCKYKCATKYSLVLHMRTHTGEKPHKCNHCDYKSSQSGTLKNHMKIHTGEKPHNCKHCDYKCSTISALKVHLRTHTGEKPHNCKHCDYKCSTKGALNYHMRTHTGEKPYNCKHCDYKSSQLGTLKKHMKTHTGEKPHDCKHCDYKCTTISALKVHMRTHTGEKPHNCKHCDNKFSRSCDLKIHIRTHTGEKPHNCKHCDYKSSTTSALKVHMRTHTGEKPHNCKHCDYKCSTTYALKVHIRTHTGEKPYNCKHCDYKCSTTSGLKVHMRTHTGEKPYNCKHCDYKYATPGTLKYHMKIHTGEKPHNCKHCDYKCSTISSLKVHMMTHTGEKPYNCKHCEYKCSQSGTLKNHMKTHTGEKPHNCKHCDYKCLTISALEVHMRTHMGEKPFDCYHCDYKCSTTSDQKRHIRTHSAEKPYNCKHCDYKCATSGALKYHMRTHTGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -