Mjur016257.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995210.1:5034016-5042687[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.028 1.3 10.0 0.6 3 23 655 676 654 676 0.90 2 22 0.093 4.3 8.4 0.3 1 21 1056 1076 1056 1077 0.96 3 22 2.2 1e+02 4.0 0.8 1 14 1153 1166 1153 1174 0.81 4 22 0.24 11 7.0 0.3 3 20 1183 1200 1181 1204 0.89 5 22 0.01 0.47 11.4 0.1 3 23 1224 1245 1222 1245 0.95 6 22 0.026 1.2 10.1 3.8 1 23 1251 1274 1251 1274 0.95 7 22 0.19 8.9 7.4 0.0 1 23 1299 1322 1299 1322 0.90 8 22 0.029 1.3 10.0 3.4 1 23 1327 1349 1327 1349 0.97 9 22 0.011 0.49 11.3 0.2 1 23 1355 1378 1355 1378 0.96 10 22 8.2e-05 0.0038 18.0 1.4 1 23 1389 1411 1389 1411 0.98 11 22 0.0022 0.1 13.5 4.0 1 23 1454 1477 1454 1477 0.96 12 22 0.002 0.092 13.6 1.4 1 23 1537 1560 1537 1560 0.96 13 22 0.003 0.14 13.1 1.4 2 23 1585 1607 1584 1607 0.95 14 22 0.061 2.8 8.9 0.1 2 23 1613 1635 1612 1635 0.94 15 22 0.015 0.7 10.8 0.2 1 21 1678 1698 1678 1699 0.95 16 22 0.0019 0.087 13.7 0.6 1 23 1709 1731 1709 1731 0.93 17 22 0.00014 0.0062 17.3 0.3 2 23 1821 1843 1821 1843 0.93 18 22 2.7e-07 1.3e-05 25.8 1.1 3 23 1850 1870 1849 1870 0.98 19 22 0.074 3.4 8.7 1.0 1 23 1888 1910 1888 1911 0.92 20 22 0.14 6.6 7.8 0.0 1 23 1933 1955 1933 1955 0.98 21 22 0.042 2 9.4 0.6 1 23 1961 1984 1961 1984 0.95 22 22 0.00046 0.021 15.6 0.6 1 23 1992 2015 1992 2015 0.96
Sequence Information
- Coding Sequence
- ATGAATGTGAATTATGACCGTGTTTGTAGACTGTGCTTGTCATCTCGATGTGAATTACTACCGATATTTCCTACCACCAGTTCGGATGACTCGGATCCTCCTGTCCTCGCTTCGAAAATAAAAGACTGCGTGTCAGTGCAGATAAGCGAAAATGACGTTCTGCCAACCAATGTCTGCAGGAAATGCATGGATAATGTCAACAACTGGCATATATTTAAGGCTGTGTGTGAGAGGAGCCAAAACAAATTACAGTCTCTGACTAACAAGGAAAGCAGCCAACTTGAAGAGTTGAATATAAAAAATGAGCCTCTATCTGATGAAGCCTATGATGATGGAGTGGTCATTGATGGATCATACCCAGACAGTGAGAATGCTGGCCCATCAAATAAATTGCAGCCAGAGGGTCCCCCGATTTTGGCTTCACTGGGGCTTACGCCAAGAAGTGATAAGAAATATATAGATCCAAGAATGGACTGGCAACGCGTACATGCTATATTGGACCTGGTCCAAGAAGACGAAGTTATTGACTCTCTGCAATCAATGGAAGAATGTGATGTCATACATCAATCAGACCACGACTCTGAGACTGAGATAGATCTCTCGTATGAACCAGTGGCTGACGACTATGTTGATTACAAGAATGGGTATTTGTGTAAGAACAGGAAAGTTATATTGAAGAAACCCAAACTAACCCCGGAGGACACAGTCGCTAGAATCAAAGAGGTTTCCAAACTAAGCAAGCGAAGCTTTGTATCCAACAAGCATTGTACTCAACAAAGAAGTGCTTGGCAGATGCTCTTCACTGATGACTTGCTAGAGCTCATAGTAGCTTCCACAAATGAAAGAATAGACACAAATAGTAAAAAATCAAAACCCACAAATCTGACTGAGATTAGAACATTGATCGGAATATTGTATTATCATGGAATTATGCGACCAACACATCCAAAGATCAGCGACCTCTGGCATGAGGAATATGGAGCTATTTGTGTAAGAAATGCTATGACATATGAAAGATTTAAATTTATTCTTGAAAATATGAGCTTTGATAGTGAGGATGACATCATTGTCCAGTTTGATGTTATGAAACGTTTGCGAAAAGTGTTTGAAATATTCGCGCTCAACTGCAGAACTTCCAAAGAAGTGAGCAACATGGTTGTCATTGATGAAATAATATTACCAATACACGGCCCTTGCCCATTCCGATATAACATCAAGAAAAAGAGTTTAAAAAATGGTATTAAATTGATGCTTTTAATAGATCCCGTAACCTTTTACGTCACGAATCTCGATGTTATAACAGACCCGTATTTTGGTTGTGATGAAATAGCTGCAAAGTTAGTGCAACACTTAGCAGGAACGGGAAGGACGATTATCATGGACAGCTGGTTTACATCCGATTCATTGATTAACCGTTTGAAAAATGACTATAACTTGTTTACAATAGGTGCTCTTCATCCAAACGATGAGAATATACCACCCCTCTTCTTATCACAGTATAGAAAGAAGAAGACTTTCATAAGTGGATTCATGGACAAAGATAAGACATTAAGTTCCTATGTGAACCAGAATTTGAAAGTTGTCAATGTACTAACTAATGATCCTAAGTTTTATAAGAAAGGGAACAGCAGCCATACATCAGTGGTTTCTTTTTATAAAAAGTATCATTCTTCTGTACAAGTGGTAGATGTATTGATGCATTACTATACCACGATGCAGCACACAAATGACTGGACGCTTTCCTTATTCTTCATGCTGTTGAACATTGGTTCTGTTAATGCTCAAGGCGTGGATAGTGAAAAGGACGAGGATTATGAAGAGGAAGAAGATCGCGAAGAAATGACCGAGCAGCAGTCTTATAGAAGTGTGCCTCAAATGCCTGAAGTTTCCATCACCGTCATGCGCCCAACTGGGGAGACTCTTCACGCTCGTCAAGGTATTCAACAGATCGCCTCTAAGGACTGTCTGGTTTGCGGCCGCTCCTACAGATACTCACACAATGCACGCAGACATGAACTGGGTGCCCACGGTTTCGACAGATACACTAACAAAACCACAGCAAAGAAATCATCCTACAGTCATATGCTACCCAAATTTAGGCCCAATCCTTTCAACCCTAAAGCACGTTTGATGCCGAATCCAATCAACCACAAAATGCAATACATACCAAAACCTGTCCCAACTAAAATGATGCCCCAGAAAGTTGTTGCACCACCAAAACCTATTCCAATTAGAACCCCTAAAACTCAGCAGAACAATTTACCATACCCCCTTCGCATTAAAGCTTTAAAAGACCTGCAAATAAAGAAAAAGGAACCACAAATATTGAAAACTTTACTTACATCGAAGCCTGAAGTTTTAGTTTCCGAACCTGAAATAATAAACTCTGGTCCAGAAAGTCCCGAGACATTGATCTCCGAACCAGAAATAGCATCCTTTCAAGTGGAGACAATTCTATCAGAGCCAGGTGGCTTTATCAATCAACCCCACGAAGACGATGAGATGGAAGATGATAATAATCAAGAGCAGAACTATGACACTGTTGATATGGAATCTGATAATGAAATAGAAATCGCTCAGAAGCAAGAAAACAATATTGATATTGAAGAGAATCATATTGGAGTTGATGCTGAAGAACAGGCACAAGAAGACGAAAACAATGATGAAGGTGATCATGAAAAAGAACGTATGGAAGATAATGTGGATAGTCAAGACATGAGTATCGAGAATAATATTAATGCAGACCTTGTAACAACCGCTAAAGAAGAACAGGATGAAGATAACGGCGAAAAGGAAAATAACGACCAAGATGCCAATCACGAAGACAATGAAGATGACGAAGATATGCCCCCAATGAGCATTGCTCCTGTGGTCGAGATTAATGAAGATTTACAAAATAACTCTTACAACAGTGAAGGTAATGAAGATGAAGACCTCGACGAGACAGTCGATCCCAATGACACTGTTGATGGTGATGAACCAACAGCAAAAGAGTTAGATCCAAATAAAGTGTATGTTACTAAATCACAAAGAGATTTCATTTTGCAATATCGTGATATTATTGAACAAATCAACACGAAGCTTTGTCTCTGTTGTAATAAAGAACATCCGCGTAGAAAAGCGGTAATACAACATTTACAGAAAAATGGGCATAAAGTTCCTAAACATACATGCTATAATTGTGTGGTTACATTCACTCACATCGGAGCTTTACTCAGCCACATGAGAGCTAACACTTGTACCAATCTGTGGAAAATAATTTACGATGAAAAAGGCATCCCTGATGATATGGTAGTGGAAGATGATGAAGAACCAAAAGACGTGAAAGTTCAATATAAAGACATTCTCAATGCAAGATCTTATGCATGCAAATTGTGTCCAGCCAAATTCCAATTGAAGCAGTTTATAATGAAGCACGTCCTAGACGTTCACGAAGATGGCCAATCTCGAGTCCCTCATTCCTGCGTTCATTGCGGGTTACGATTCAAAGAAAAAAGTATCGGCAAGAAGCACATTCGCAATGGAGATTGTACTGTTTACATCGCTTGCGATTTATGTTCTGAGAAATTCTCGACTACACACGAGTTTAACGAACACGCCGTAGCCGCCCACGCGGGCAGCTTCGACCCGGACAGCCAGAGCAAGTGCGTCGACGGCAGGCCGACGGACTGCCCCATCTGTGGAAAGAAGAACAGCAGCTATCCTAATTTGGTCAAACACTTGAGAGCGATACACGACGATGAAAAACCTCATCACTGTCAACATTGCGATGCCAAGTTCGAACAAGCGTCCGAAATTAACAAACATATTTACATGGAGCACTCCAATCGAATGCTGGGTATGACCACCGAGCCCGACATGTCGCTCGTGAAGGAGGAAGCCGAGGAGTACCACTACTCGTGCACGGAGTGCAACGCCATCTTCGAAACCGTCGACGCGTGGACCGACCACCAGGTCGCGGAACACAACCAGATCGCTCACCACTGCGACCAGTGCGAGAAGAAATTCTTGCGTCCGTCAGAACTCGCCGAACATAAAAATACACATCTCCGAGTTAAATTCTACCCATGCAGTATTTGTTCCAACTCTTACAGCTCTCCACAGAAACTGTCCGAACACCTCCAACAGGCTCACCCCAGTGGTGGTCGAAATTCGGATAGTGAATTTTACTGCGATATATGCGTACGATCGTTCAAGAGCCGTCAGGCGTTTTCTAATCATATGCGTATTCATGCTAAAGTGCCCACAACTAATAGGAAACCTGGTGAACCGAAGGGCTTTCCACCTCAAATAATAGGAAAGCCCATTAAACAATTTTCAATGCAACCCGGATTCAGCCCATTTGTGCCGAACGCCCCTTACTGCTGTGACATTTGTGGAAAAGGATTCATGCATAAGAAAAACATATGGAAGCATAAGAAGGTGTTGCATGCAGATATTCTCAATGACAGAGTCGATAGCGAAGAGAATACTATGCACGCGTCTACCGAGGAAGACGATTACAATGTGGACGAAAATGGCGCAATTCTGTCTACTCCGCAGTTCAATAGTTTCAACTTTACAAACCTTTCCAACAATATGCAACAGACATCACAAGATGCGCTCCCATACTCCTGTGACATATGTTATAAGCGCTTCCCGCTTAGAACGAGTTTGTGGAAGCACAAGAGAGCTAAACATGGAATCGCGTATGGTTCAAACGCAGGTGGCTCTGAAGGCCAACCGGCACCGACGCCGTCAGAAGGCAGGTCGAGTTGCACCATATGTAAAATATCATTTCCCGATAAGAAGTCTTACTACCGTCACAGAAAAAACATTCATAAATCTTCCGTACAGATGTGCAAAATTTGTGGAAAACCACTCAGCTCGACCTTAGAACTTTACGAGCATTTGAAGGCAGCGCATGCTCGTGAATTGTTGGGTTATGACGCCAATCAAGGAACGAGTAAGCAAGAGGCCGTACAAGAGGCGGAGCCGGACTACGATGCAGAACAAGATCTGGTCGACCCCGGTGCTGAGTTCCAAGCGCGATATCCATGTGATACTTGTGGCAAACAGTTTGTTGGCTTATTGGCTTTGCAAAACCATCAGTGTATCAATCAGATAACATCGCAGCCGCAAACCTTCGACTGTGAAATATGTCACAAGAGCTACACTTCGATCGCCGCTTTGAAGAGCCACCGCGGCTGGCATCTGAGGTCTCCCGACGGTAAGGCGGCCGCGAATAACACGGGACTCTGGATGCCTCAGAATAAAGTTACGACGAAAATAAGTAAACACGAGGTTACCGAACCCATACCGACTCGCGCGTCCCAACCGACGCCGACCACCAGCGTGCCAAAGAGGAGGTTACCACCGGAAGTGGAGGTCACAGTGGTTAACCCGAATAAGAAGTTACGGTCTGATGATTCTATCGAAATGGAACACCAAAATAACTTGTCCGGTGGACCCGAAGACAGGTACTGTAACATTTGCGACAAAGAGTTTACCAAGCGAGCTGCATATCAGCGTCACATGGACGAGGTGCACCAACCTAATTCTGTGTTCTGCCCAGTCTGCGATAAGAGCTTCACTCGAAAGTCTACGCTCATCGTGCATATGAAGAAACATTACGAAGGAGGGGAAGGGACGTCTAGTTTGGGTCAAATGGAGGATGACGGGCACGCGTGTGACGTTTGCGGCGCTCAGTTCGACAGCGTGAAGGATTTGAGTAAGCACAAGGCCTTGCATCACGCGGAAGACTCCGGCGGCGACTCGGACGACGACGGCAGCATGCCGATGCCGCAGCCCGGGGAATTCACGTGCGGCCAGTGCGGCGACGGCGTGGCCACTCCGCGCGACCTCATCGCGCACCGCTCGATGCACGCCACGCCAACCAAGTTCTTCTGCAACATTTGTAAAGTTTACTTCGCGCGCGCCCTCGACCTGTCCTCTCACACTCGAGCCAGGCACTCGGACAACGAGAAAGTTTTCTTCCCTTGTGCTATGTGCGACCGATTTTATATGAACAAAAAGAGTTTGCAACGGCACATTGAAATGATGCACTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRCELLPIFPTTSSDDSDPPVLASKIKDCVSVQISENDVLPTNVCRKCMDNVNNWHIFKAVCERSQNKLQSLTNKESSQLEELNIKNEPLSDEAYDDGVVIDGSYPDSENAGPSNKLQPEGPPILASLGLTPRSDKKYIDPRMDWQRVHAILDLVQEDEVIDSLQSMEECDVIHQSDHDSETEIDLSYEPVADDYVDYKNGYLCKNRKVILKKPKLTPEDTVARIKEVSKLSKRSFVSNKHCTQQRSAWQMLFTDDLLELIVASTNERIDTNSKKSKPTNLTEIRTLIGILYYHGIMRPTHPKISDLWHEEYGAICVRNAMTYERFKFILENMSFDSEDDIIVQFDVMKRLRKVFEIFALNCRTSKEVSNMVVIDEIILPIHGPCPFRYNIKKKSLKNGIKLMLLIDPVTFYVTNLDVITDPYFGCDEIAAKLVQHLAGTGRTIIMDSWFTSDSLINRLKNDYNLFTIGALHPNDENIPPLFLSQYRKKKTFISGFMDKDKTLSSYVNQNLKVVNVLTNDPKFYKKGNSSHTSVVSFYKKYHSSVQVVDVLMHYYTTMQHTNDWTLSLFFMLLNIGSVNAQGVDSEKDEDYEEEEDREEMTEQQSYRSVPQMPEVSITVMRPTGETLHARQGIQQIASKDCLVCGRSYRYSHNARRHELGAHGFDRYTNKTTAKKSSYSHMLPKFRPNPFNPKARLMPNPINHKMQYIPKPVPTKMMPQKVVAPPKPIPIRTPKTQQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIINSGPESPETLISEPEIASFQVETILSEPGGFINQPHEDDEMEDDNNQEQNYDTVDMESDNEIEIAQKQENNIDIEENHIGVDAEEQAQEDENNDEGDHEKERMEDNVDSQDMSIENNINADLVTTAKEEQDEDNGEKENNDQDANHEDNEDDEDMPPMSIAPVVEINEDLQNNSYNSEGNEDEDLDETVDPNDTVDGDEPTAKELDPNKVYVTKSQRDFILQYRDIIEQINTKLCLCCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFTHIGALLSHMRANTCTNLWKIIYDEKGIPDDMVVEDDEEPKDVKVQYKDILNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPHSCVHCGLRFKEKSIGKKHIRNGDCTVYIACDLCSEKFSTTHEFNEHAVAAHAGSFDPDSQSKCVDGRPTDCPICGKKNSSYPNLVKHLRAIHDDEKPHHCQHCDAKFEQASEINKHIYMEHSNRMLGMTTEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSICSNSYSSPQKLSEHLQQAHPSGGRNSDSEFYCDICVRSFKSRQAFSNHMRIHAKVPTTNRKPGEPKGFPPQIIGKPIKQFSMQPGFSPFVPNAPYCCDICGKGFMHKKNIWKHKKVLHADILNDRVDSEENTMHASTEEDDYNVDENGAILSTPQFNSFNFTNLSNNMQQTSQDALPYSCDICYKRFPLRTSLWKHKRAKHGIAYGSNAGGSEGQPAPTPSEGRSSCTICKISFPDKKSYYRHRKNIHKSSVQMCKICGKPLSSTLELYEHLKAAHARELLGYDANQGTSKQEAVQEAEPDYDAEQDLVDPGAEFQARYPCDTCGKQFVGLLALQNHQCINQITSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNTGLWMPQNKVTTKISKHEVTEPIPTRASQPTPTTSVPKRRLPPEVEVTVVNPNKKLRSDDSIEMEHQNNLSGGPEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGEGTSSLGQMEDDGHACDVCGAQFDSVKDLSKHKALHHAEDSGGDSDDDGSMPMPQPGEFTCGQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMMH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -