Mjur021822.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Maniola jurtina
Gene Symbol
-
Assembly
GCA_905333055.1
Location
HG995212.1:11712631-11718364[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0022 0.1 13.5 2.1 1 23 217 240 217 240 0.97
2 17 0.0033 0.15 12.9 4.3 2 23 247 268 246 268 0.97
3 17 4.4e-06 0.0002 22.0 2.5 1 23 274 296 274 296 0.96
4 17 2.2 1e+02 4.0 3.6 1 21 302 322 302 324 0.94
5 17 0.00013 0.006 17.3 2.1 1 23 330 352 330 352 0.99
6 17 0.014 0.65 10.9 3.0 1 23 358 380 358 380 0.98
7 17 7.9e-07 3.6e-05 24.3 1.1 1 23 386 408 386 408 0.96
8 17 1.3e-05 0.00062 20.4 4.9 1 23 414 436 414 436 0.98
9 17 4.2e-05 0.0019 18.9 2.5 1 23 442 464 442 464 0.98
10 17 0.0022 0.1 13.5 7.6 1 23 470 492 470 492 0.98
11 17 8.5e-05 0.0039 17.9 3.4 1 23 498 520 498 520 0.97
12 17 0.075 3.5 8.6 6.5 1 23 526 549 526 549 0.95
13 17 0.0012 0.058 14.3 5.1 1 23 555 577 555 577 0.98
14 17 9.1e-07 4.2e-05 24.1 5.9 1 23 611 633 611 633 0.99
15 17 6.7e-05 0.0031 18.3 0.8 1 23 639 662 639 662 0.98
16 17 8.7e-05 0.004 17.9 4.8 1 23 668 690 668 690 0.99
17 17 7.2e-06 0.00033 21.3 2.1 1 23 696 718 696 718 0.99

Sequence Information

Coding Sequence
ATGTTTCCCGCCTCACCCAGAGTCCGCGCGGCCTGGCTCCAAGCTCTCGGTAAACAAGGATCTCGTTTGCCACGTGGCGCTGTAGTTTGCTCACAGCATTTCCTGACCGATGACTTCTGTGAAACAAGGAGTGGGTTGAAGAAAATTCGGCTCGGAGCTATTCCTTTTGTGCTAAATGACATAGAGTCGTCTGACGAAAATCAGAAACCAACAGATGAACACAAACAGGCAGAAATAGACATTGTACATGAGGTACTAGACACTATTAAAATAAAAAATGAACAATCATATGAGGTTATTTATGCTATGGATAGTGAGACACTTTCTAAACAGGAAGCTTTAGATCAGGAAGTTACGGAGCTAAATTTCTATGATGCAAACTTTGATGTGATTAAAAATGAGATATATGAAAATAGTTTAGAAATAAAAAATAGTAACAGAAAAGAGGCTCTATCTGCAACAAATTCAAGTCCAAGTACTGAGATGCTGGAATTACAAGAAAGTGAAAAAAAGGGTATGAGTTTAGAAACTCACTCAACTGCACATAGTGATAAAGCGGAACTAGAAAATGTTACTGCATCAAAGGGTTGTAATGAAAACAAAAGTCGATCATTTCAATTTATCAGCAGGAATAGTAAGAGAAATCTGTATGTGTGTGATATTTGTCATCAGACTAGTAAAATTAAAACTAGTCTCATTCATCATATTATGAGAGCTCACACTGGGGAAAAGCCGTTATCCTGTGCGCACTGTCAATACAAATGTGTGGATAAGGGGTCCTTAACATCGCACTTGAGGAAGCACACTGGTGAAAAATCATATCTTTGTAATATTTGCAGTAAAAAGTTTGCACATCAATCAAATTTGGTCACTCATAGGAGGATACACACTGGAGAGAAACCTTATGCATGTGAGCTATGTGATTTTAAAACTGGATCTTGCAGTCAAATAATTAAGCACATGCAATGTCACAATCTTGAAAAACCTTATCGTTGCAATGTGTGCCAGGCTCAATTAAAAACAAAATCTACTTTAAGGAGGCACAAGAGAATTCACACTGGGGTCAAACCCTTTTCTTGTGACTATTGTGAATATAAATGTGTAAAGAAATATTCCTTGATTCCACACATAAGAAAACACACTGGAGAGAAACCGTACTTGTGTAAGATTTGTCCATATAAATTTTCAAGTAGGTCTGGTTTAACTTTGCACATGCGTACTCACACTGGGGAGAGAGCTTACTCATGTCAGCATTGTCATTCTAAGTTTTCGAGAAACAGTGCTTTGAATATACACATGCGTATTCACACCGGCGAAAAGCCTTATCCTTGTAAATATTGTGACTTACGATGTTCAACAACAAGTGACCTCAAAATTCATACAAGGATTCATACTGGCGAAAAACCGTATCACTGTAAGCATTGTGAATATAAATGCGCAAGCTCAAGTTCCTTAAGAACCCATATGAGTGTACATACAAGAGACAAGCCTTTTGCGTGTCAGCATTGTTCTGTAAGATTTGCACATAAATCTGGACTAAACACTCACATGAAAATTCACACTGGGGAGAAACCTCATTCTTGCAAAGTGTGCGACTATAAATGTTCATCGAAGTGCGTTTTAAAGAATCATATTAAGGGGGTACACAACAGGGAAAAACCTTTTCACTGTAACTATTGTCCGTATAAATCAACACAGAAACACGCTTTAGTGTATCATATAAGAACTCACACTGGCGAGAAACCGTATTCCTGTCGGCTTTGTGACTTTAAAAGTTCATGTAAAAAAGGTGTAGAGCTTCACACCAGGACTCACACCGGCGAGAAACCTTATCGTTGCAATGTTTGCCATTATAAATTTGCTACAAATTCCAGTTTCAAGAGGCATATGAGAACTCACACTGGGGAAAAACCTTACACTTGCGATTTATGTCAAAATAAATTTTCGAGGAAAAGCGATGTTAGAACACACATTATGATGGCTCACGATGGCAAGAAACCTTATCGTTGCAATGTTTGTCATTGTGAGTTTACAACTAACGCAGTTTTGAAGAAGCATATGCTGACTCACACTAGGACGGGACCTTATTCTTGCGAAATTTGTCAAAAAAAATTTACAAAGAAAATCGATATAAGAACACATATGAGGACGCACACATTCTAG
Protein Sequence
MFPASPRVRAAWLQALGKQGSRLPRGAVVCSQHFLTDDFCETRSGLKKIRLGAIPFVLNDIESSDENQKPTDEHKQAEIDIVHEVLDTIKIKNEQSYEVIYAMDSETLSKQEALDQEVTELNFYDANFDVIKNEIYENSLEIKNSNRKEALSATNSSPSTEMLELQESEKKGMSLETHSTAHSDKAELENVTASKGCNENKSRSFQFISRNSKRNLYVCDICHQTSKIKTSLIHHIMRAHTGEKPLSCAHCQYKCVDKGSLTSHLRKHTGEKSYLCNICSKKFAHQSNLVTHRRIHTGEKPYACELCDFKTGSCSQIIKHMQCHNLEKPYRCNVCQAQLKTKSTLRRHKRIHTGVKPFSCDYCEYKCVKKYSLIPHIRKHTGEKPYLCKICPYKFSSRSGLTLHMRTHTGERAYSCQHCHSKFSRNSALNIHMRIHTGEKPYPCKYCDLRCSTTSDLKIHTRIHTGEKPYHCKHCEYKCASSSSLRTHMSVHTRDKPFACQHCSVRFAHKSGLNTHMKIHTGEKPHSCKVCDYKCSSKCVLKNHIKGVHNREKPFHCNYCPYKSTQKHALVYHIRTHTGEKPYSCRLCDFKSSCKKGVELHTRTHTGEKPYRCNVCHYKFATNSSFKRHMRTHTGEKPYTCDLCQNKFSRKSDVRTHIMMAHDGKKPYRCNVCHCEFTTNAVLKKHMLTHTRTGPYSCEICQKKFTKKIDIRTHMRTHTF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-