Mjur011718.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995236.1:3068721-3073101[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.1e-05 0.00051 20.7 0.2 1 23 355 377 355 377 0.98 2 15 1.2e-05 0.00056 20.6 2.8 1 23 411 433 411 433 0.98 3 15 0.00077 0.036 14.9 4.1 1 23 439 461 439 461 0.98 4 15 1.2e-05 0.00056 20.6 2.8 1 23 467 489 467 489 0.98 5 15 5.2e-05 0.0024 18.6 2.6 1 23 495 517 495 517 0.98 6 15 1.5e-05 0.00069 20.3 2.3 1 23 523 545 523 545 0.98 7 15 0.00056 0.026 15.4 3.5 1 23 551 573 551 573 0.98 8 15 0.00057 0.026 15.3 3.5 1 23 579 601 579 601 0.98 9 15 0.00072 0.033 15.0 4.1 1 23 607 629 607 629 0.98 10 15 9.2e-06 0.00043 21.0 3.5 1 23 635 657 635 657 0.98 11 15 0.0011 0.049 14.5 4.5 1 23 663 685 663 685 0.98 12 15 1.2e-05 0.00056 20.6 2.8 1 23 691 713 691 713 0.98 13 15 5.2e-05 0.0024 18.6 2.6 1 23 719 741 719 741 0.98 14 15 2.6e-05 0.0012 19.6 1.2 1 23 747 769 747 769 0.98 15 15 1.9e-05 0.00089 19.9 4.0 1 23 775 797 775 797 0.98
Sequence Information
- Coding Sequence
- ATGCGTTGCTGTGTGCCCTTCTGCAAAACCACTTCGGAGGTCGTCTCAAAATCCGAGGAGATTACATTTCACGAGTTCCCCAGCGAAGTGCATCTCCGAGCTGCTTGGCTCAGAGCCCTCGGCAAACAAGACACTCTCCTGCCAGAGCGTGCTGTGGTCTGCTCGCAGCATTTTCTAAACGATGACATTTATGAAACAGAAAGTGGCTCAAGGCGGATTCGTACTGGTGCTGTCCCCTCACCAGTGCTGGTCTGCATGATATGCCTGGACACTCGCAGCAAGCTGTTTCTGATGAGTAAATACAAGCTGGAAGAAGCATATGAACATTTAGTGGGACATCCTTTGTGTGGTCAAGGAAAGCTCAAACCAACGCTTTGTGTGCAATGTGCCCAGAGACTGGTGAACTTTAGCACATTCAGAGACAAGAGCTTGAGAGCGCGCTCCCTGATGATGGAGCTACTTGACAGACATGAAGTGATAACAATACGACACGTCAAATTGATAAGCCGTGTAAAGTACCAACTACAGTCTGACATTGTCTCGGCAGTGTCAGAGCCCGACTACTGCGATGTGTACATAGCACACTCCGACGCGGACGGACGGACAGAACTAGACGCGACTGCGACTGCCGCAACTGATGAAGCAGTTGCAGTGAAACGGGAAGTTGAAGACCGTGAAGATGATGAAGACGAGCCAGCCGCGGCCGAAACACAGGCTCCCACCGCGTACGTACCATATGTGACAAACACAGGCTCCCACCGCGTACGTACCATATGTGACAAACACAGGTTCCCACCGCTCGCTCCTTCGAATCTCGCGACCAATCACGGAAACGAAGAACATCCAACTGATACAGACGACGAGTTGGGTATAATATTGTCTTTCGAAAATAATACAAACACTTTTGAATATTCAACGAAACCTCGGGACTCCGAACTAAAACCAAAGGAAACCTTTACAAAAATAAGTAATAATATCAATATTCGAACGACGAGGCGAAACAAACACAATTCCCAGGATATATCCGGTACACAGTTAGGAAACTATACTGACCAGATACAGTATATCTGTGACGTTTGCCAAAAGATATTTCAACGGAAAAGTTCCTTAGTTATCCACATTAGGGCGCACACTTACGCTAACACTTTCTCATGTAAGTTAAGAAAGCGCAAATTCAGTCAAAATAGTACGTCATCGAGCCCCAAGCGGACTCACACTGGCGAAAAGCTTTTTGTTTGTAAGTTGTGCGATTATAAATGTACAGTTAACAGTAATTTAGTGAGTCACATGAGGACACACACTGGCGAAAAGCCATTCGCTTGTAAGTTCTGTAAATACAAATGCACAGAAAATGGTAGTTTAGTGAAACACATGAGGACTCACACTGGCGAAAAGCCTTTTGTTTGTAAGTTGTGCGATTATAAATGTACAGTTAACAGTAATTTAGTGAGTCACATGAGGACTCACACTGGCGAAAAGCCTTTTGTCTGTAAGTTGTGCGATTATAAATGTACAGTTAACAGTAGTTTAGTAATGCACATGAGGACCCACAATGGCGAAAAACCTTTTGTTTGTAAGTTATGCGATTATAAATGCACAGGAAATGGTAATTTAGTGAAGCATATGAGGACTCACACTGGCGAAAAACCGTTTGTTTGTAATTTCTGTAAATACAAATGCACAGAAAGTGGTAGTTTAGTGACACACATGAGGACTCACACTGGTGAAAAGCCATTCGCTTGTAAGTTGTGTAAATACAAATGCACCGAAAATGGTACTTTAGTGAAACACATGAGAACTCACACTGGCGAAAAGCCTTTCGCTTGTAAGTTCTGTAAATATAAATGCACAGAAAGTGGTAGTTTAGTGAAACACATGAGGACTCACACTGGCGAAAAGCCTTTTGTCTGTAAGTTGTGCGATTATAAATGTACACAAAACAGTAGTTTAGTGAGTCACATGAGGACACACACTGGCGAAAAGCCATTCGCTTGTAAGTTCTGTAAATACAAATGCAAAGAAAATGGTAGTTTAGTGAAACACATGAGGACTCACACTGGCGAAAAGCCTTTTGTTTGTAAGTTGTGCGATTATAAATGTACAGTTAACAGTAATTTAGTGAGTCACATGAGGACTCACACTGGCGAAAAGCCTTTTGTTTGTAAGTTGTGCGATTATAAATGTACAGTTAACAGTAGTTTAGTAATGCACATGAGGACCCACAATGGCGATAAACCTTTTGTTTGTAAGTTGTGCAATTATAAAAGTTCACGAAATGGTAGTTTAGTGAGTCATATGAGGACTCACACTGGCGAAAAGCCTTTTGTCTGCAAGTTGTGCAATTATAAATGTACACAAAACAGTAGTTTAGTGAGTCACATGAGGACTCACACTGGGTAA
- Protein Sequence
- MRCCVPFCKTTSEVVSKSEEITFHEFPSEVHLRAAWLRALGKQDTLLPERAVVCSQHFLNDDIYETESGSRRIRTGAVPSPVLVCMICLDTRSKLFLMSKYKLEEAYEHLVGHPLCGQGKLKPTLCVQCAQRLVNFSTFRDKSLRARSLMMELLDRHEVITIRHVKLISRVKYQLQSDIVSAVSEPDYCDVYIAHSDADGRTELDATATAATDEAVAVKREVEDREDDEDEPAAAETQAPTAYVPYVTNTGSHRVRTICDKHRFPPLAPSNLATNHGNEEHPTDTDDELGIILSFENNTNTFEYSTKPRDSELKPKETFTKISNNINIRTTRRNKHNSQDISGTQLGNYTDQIQYICDVCQKIFQRKSSLVIHIRAHTYANTFSCKLRKRKFSQNSTSSSPKRTHTGEKLFVCKLCDYKCTVNSNLVSHMRTHTGEKPFACKFCKYKCTENGSLVKHMRTHTGEKPFVCKLCDYKCTVNSNLVSHMRTHTGEKPFVCKLCDYKCTVNSSLVMHMRTHNGEKPFVCKLCDYKCTGNGNLVKHMRTHTGEKPFVCNFCKYKCTESGSLVTHMRTHTGEKPFACKLCKYKCTENGTLVKHMRTHTGEKPFACKFCKYKCTESGSLVKHMRTHTGEKPFVCKLCDYKCTQNSSLVSHMRTHTGEKPFACKFCKYKCKENGSLVKHMRTHTGEKPFVCKLCDYKCTVNSNLVSHMRTHTGEKPFVCKLCDYKCTVNSSLVMHMRTHNGDKPFVCKLCNYKSSRNGSLVSHMRTHTGEKPFVCKLCNYKCTQNSSLVSHMRTHTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00954850;
- 90% Identity
- -
- 80% Identity
- -