Mjur006977.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995233.1:2085805-2090190[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.9e-05 0.00088 20.0 0.5 1 23 344 366 344 366 0.98 2 15 6.2e-05 0.0029 18.3 6.0 1 23 400 422 400 422 0.98 3 15 3.5e-05 0.0016 19.2 2.7 1 23 428 450 428 450 0.98 4 15 8.4e-05 0.0039 17.9 3.6 1 23 456 478 456 478 0.98 5 15 6.8e-05 0.0031 18.2 3.5 1 23 484 506 484 506 0.98 6 15 0.00015 0.0068 17.2 3.1 1 23 512 534 512 534 0.98 7 15 7.1e-05 0.0033 18.2 3.2 1 23 540 562 540 562 0.98 8 15 0.00015 0.007 17.1 5.8 1 23 568 590 568 590 0.98 9 15 2.7e-05 0.0013 19.5 2.1 1 23 596 618 596 618 0.98 10 15 0.00015 0.0068 17.2 3.1 1 23 624 646 624 646 0.98 11 15 1.5e-05 0.00067 20.3 3.0 1 23 652 674 652 674 0.98 12 15 7.1e-05 0.0033 18.2 3.2 1 23 680 702 680 702 0.98 13 15 2.3e-05 0.0011 19.7 2.4 1 23 708 730 708 730 0.98 14 15 1.8e-05 0.00085 20.0 2.1 1 23 736 758 736 758 0.98 15 15 6.3e-05 0.0029 18.3 4.2 1 23 764 786 764 786 0.98
Sequence Information
- Coding Sequence
- ATGGCAATGCGGTGCTGTGTGCCCTTCTGCAAAACCACGGCGGAGGTCGTCTCCGAATCCGAGGAGATTACATTTCACGAGTTCCCCAGAGAAGTGCATCTCCGTGCTGCTTGGATCAGAGCCCTCGGCAAACAAGACACTCTCCTGCCAGAGCCTGCTGTGGTCTGCTCGCAGCATTTTCTGAACGACGACATTTATGAAACAGAGAGTGGCTCAAGGCGGATTCGTACTGGTGCTGTCCCCTCACCAGTGCTGGTCTGCATGATATGCCTGGACACTCGCAGCAAGCTGCTTCTGATGAGTAAATACCAGTTGGAAGAAGCATATGAACATTTAGTGGGACATCCTTTGTGTGGTCAAGGAAAGCTCAAACAAACGCTTTGTGTGCAATGTGCCCAGAGACTGGTGAACTTTAGCGCATTCAGAGACAAGAGCTTGAGAGCGCGCTCCCTGATGATGGAGCTACTTGACAGACATGAAGTGATAACTATACGACATGTCAAATTGATAAGCCGCGTAAAATACCAACTACAGTCCGACATTGTCTCGGCGGTGTCGGAGCCCGACTACTGCGATGTGTACATAGCACACTCCGACGCGGACGGACGGACAGAACTAGACGCGACTGCCGCAACTGACGAAGCAGTTGCAGTCAAACGGGAAGCCGAGCCAGCCGCCGCCCAAACAGAGTTATATCCTTTCAGCCACATGATTCCCAAGCCGGAGTCGTCGGGGGACTGCGAGCAAGCTTCGGTCGCTCCTTCGGTTCTCGCGACCAATCACGGAAACGAAGAACATCCGACTGATACAGACGACGAGTTGGATATATTGTCTTTCGAAAATAATACAAACATTGTTGAATATTCAGGGAAATCCCAGGACCCCTTACTAAAACTGAAGGAATCGTTGGCGAAAATAAGTGATAATATCAATTTGCGAACAGCGAGGCCAAATGTTCTTTTGAAAAACGAACACAATTCCCAGGATATATCCAGTACACAGTTAGGTAACTATACTGACCAGATACAGTATATCTGTGACGTTTGCCAAAAGATATTTCAACGGAAATATTCCTTAGTTACCCACATTAGGGCGCACACTTACGCAAACACTTTCTCATGTAAGTTAAGAGGGCGCAAATTCACTCAAAGCAGTTCGTCATCGAGCCCCAGGAGGACTCACACTGGCGATAAGCCTTTTGTGTGCAAGTTATGTAAATACAAATGTGCACGAAATAGTCATTTAGTGAATCACATGAGGACTCACACTGGCGATAAGCCTTTTGTGTGTAAGTTGTGTGATTATAAATGTACAGTAAACAGTAGTTTAGTGAGTCACATGAGGACTCACACTGGCGATAAGCCTTTCGTGTGTAAGTTGTGCAATTATAAATGTACAGTAAACAGTAGTTTATTGAGTCACATGAGGACTCACACTGGCGAAAAGCCTTTCGCTTGTAAGTTGTGCAATTATAAATGTACAGTAAACAGTAGTTTAGTGAAGCACATGAGGACTCACACTGGCGATAAGCCTTTCGTGTGTAAGTTGTGCAATTATAAATGTACAGTAAACAGTAGTTTAGTGAGTCACATGAGGTCTCACACTGGCGAAAAGCCTTTCGTGTGCAAGTTGTGCAATTATAAATGTACAGTAAACAGTAGTTTAGTGAGTCACATGAGGACTCACACTGGCGAAAAGCCTTTCGTGTGTAAGTTGTGCAATTATAAATGTACAGTAAATAGTCATTTAGTGAAGCACATGAGGTCTCACACTGGCGAAAAGCCTTTCGTGTGTAAGTTGTGTGATTATAAATGTACAGTAAACAGTAGTTTAGTGATTCACATGAGGACTCACACTGGCGAAAAACCTTTTGTGTGTAAGTTGTGCAATTATAAATGTACAGTAAACAGTAGTTTAGTGAGTCACATGAGGTCTCACACTGGCGAAAAGCCTTTCGTGTGTAAGTTGTGTGATTATAAATGTACAGCAAACAGTAATTTAGTGAAGCACATGAGGACTCACACTGGCGAAAAGCCTTTTGTGTGTAAGTTGTGCAATTATAAATGTACAGTAAACAGTAGTTTAGTGAGTCACATGAGGACTCACACTGGCGAAAAGCCTTTCGTTTGTAAGATGTGCAATTATAAATGTGCAGTAAATAGTGATTTAGTGAAGCATATGAGGACTCACACTGGCGAAAAGCCCTTTGCGTGTAATTTGTGCGATTATAAATGTACAGTAAACAGTAATTTAGTGAGTCACATGAGGACTCACACTGGCGAAAAACCTTTCGCTTGTAAGTTATGTAAATATAAATGTACAGAAAACAGTAATTTAGTGAAGCACATGAGGACTCACACTGGCTAA
- Protein Sequence
- MAMRCCVPFCKTTAEVVSESEEITFHEFPREVHLRAAWIRALGKQDTLLPEPAVVCSQHFLNDDIYETESGSRRIRTGAVPSPVLVCMICLDTRSKLLLMSKYQLEEAYEHLVGHPLCGQGKLKQTLCVQCAQRLVNFSAFRDKSLRARSLMMELLDRHEVITIRHVKLISRVKYQLQSDIVSAVSEPDYCDVYIAHSDADGRTELDATAATDEAVAVKREAEPAAAQTELYPFSHMIPKPESSGDCEQASVAPSVLATNHGNEEHPTDTDDELDILSFENNTNIVEYSGKSQDPLLKLKESLAKISDNINLRTARPNVLLKNEHNSQDISSTQLGNYTDQIQYICDVCQKIFQRKYSLVTHIRAHTYANTFSCKLRGRKFTQSSSSSSPRRTHTGDKPFVCKLCKYKCARNSHLVNHMRTHTGDKPFVCKLCDYKCTVNSSLVSHMRTHTGDKPFVCKLCNYKCTVNSSLLSHMRTHTGEKPFACKLCNYKCTVNSSLVKHMRTHTGDKPFVCKLCNYKCTVNSSLVSHMRSHTGEKPFVCKLCNYKCTVNSSLVSHMRTHTGEKPFVCKLCNYKCTVNSHLVKHMRSHTGEKPFVCKLCDYKCTVNSSLVIHMRTHTGEKPFVCKLCNYKCTVNSSLVSHMRSHTGEKPFVCKLCDYKCTANSNLVKHMRTHTGEKPFVCKLCNYKCTVNSSLVSHMRTHTGEKPFVCKMCNYKCAVNSDLVKHMRTHTGEKPFACNLCDYKCTVNSNLVSHMRTHTGEKPFACKLCKYKCTENSNLVKHMRTHTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00954850;
- 90% Identity
- iTF_00954850;
- 80% Identity
- -