Mjur008121.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Maniola jurtina
Gene Symbol
-
Assembly
GCA_905333055.1
Location
HG995213.1:1742145-1754112[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0092 0.43 11.5 4.8 1 23 201 223 201 223 0.96
2 18 6.4e-05 0.003 18.3 8.3 1 23 229 251 229 251 0.98
3 18 0.00024 0.011 16.5 4.2 1 23 257 279 257 279 0.98
4 18 0.0005 0.023 15.5 3.3 1 23 285 307 285 307 0.98
5 18 6.7e-05 0.0031 18.2 1.4 1 23 313 336 313 336 0.97
6 18 0.0025 0.12 13.3 2.9 1 23 342 364 342 364 0.95
7 18 0.0034 0.16 12.9 1.2 1 23 370 392 370 392 0.98
8 18 5e-05 0.0023 18.7 3.7 1 23 398 420 398 420 0.99
9 18 0.0016 0.072 13.9 2.2 1 20 426 445 426 448 0.92
10 18 8.1e-05 0.0037 18.0 2.3 1 23 454 476 454 476 0.97
11 18 9.1e-05 0.0042 17.8 0.4 1 20 482 501 482 504 0.94
12 18 4.6e-05 0.0021 18.7 3.3 2 23 511 532 510 532 0.97
13 18 0.0074 0.34 11.8 2.9 1 23 538 560 538 560 0.98
14 18 2e-06 9.3e-05 23.0 0.8 1 23 568 590 568 590 0.98
15 18 9.1e-05 0.0042 17.8 1.9 1 23 596 618 596 618 0.98
16 18 5e-07 2.3e-05 24.9 4.0 2 23 625 646 624 646 0.97
17 18 8.1e-06 0.00038 21.1 1.4 1 23 652 674 652 674 0.99
18 18 1.3e-06 6.1e-05 23.6 1.9 1 22 680 701 680 701 0.96

Sequence Information

Coding Sequence
ATGGAGGAACAACTCGTAATACCTAAGGAGGAAATGTTAGAAGAGGAACATAATATTATTACTGTTGAATTTGAGTGTGAAGATAATAAAGGTTTTATTGTACCTATACAAGAGTACTCAAACACAAGTCAACCCCTAGACTCCGCAGATTCGGACCAACAAATTGACAACATGTTAATTGTACCTAAAGAAGAGATTATTGTACTTAAAGAAGAGTTACCCCACCTGAGTCCACACCAAGACTCCGCAAATTCAGATCAACAAATGGTCAACATATTCCTGCCAATCAAAACAGAAACAATTATAAGTAAAGAAGTTGCAGAGTTACAAAAAACACAAATGTCATCTGCAGACACGGATTTGTTTGCAGGATGTCCGACGACCTACATCAAATGGGAGCCTTCACAAACTGAAGCAAGTCTGCCCACAGATGTTACTCAAACACTCGCTTCTACTTCGCGGCACGAACGTCCACAGAACCAAATTGATCGAGCTGCTGAGATTAAGGACCTTCCTTCTGGCAATGTTTCCGAGGAAATCAGGACCAGTAAAAGTGCTTCACTTTTACATAAAATAGAGAAAGGCACTGACAAGAAACCTCATGCTTGTCACCTATGTCAGGCTTCATTTTTACACAAAAGTCAGTTAACTGCTCACATTACAACTCACACTAGATACAAACCTCACTCCTGCCATATATGTCATGCTAAGTTTTCATACAAAAGTCAATTAACTACTCATCTTAGGACTCATACAGGAGATAAACCTTACAGCTGTGATATATGTCAGGCCAAATTTGTACAGAAACATCACTTAACAACTCACAGTAGGATACACACTGGGGAAAAACCTTACTCCTGTGATATATGTGAGGCCAAATTTGCCCATAAACACAGCTTAACAACTCACAATAGGATACACACTGGGGAAAAACCGTATGCCTGTGATAAATGTCAGGCCAAATTTGTTCAAAAAACTCAATTAACTACTCACATTAAAAGGACACACATTGGAGACAAACCTCACTCCTGTGATATATGCCAGGCTAAATTTGCACACAAAAGTTACTTAATTACTCACAGTAAGGCTCACACTGGAGGCAAACCATACTCCTGTGATATATGTCAGGCTAAATTTTTATACAAAAGTCAATTAACTACTCATAGTAGGATTCATACTGGAGATAAACCTTACTCCTGTGATATATGTCAGGCCAAATTTGTACAGAAATGCCACTTAGCAACTCACATTAGGACACACACTGGGGAAAAACCTTATTCCTGCGATATATGTCAGGCTAAATTTTCACTCAAAAGTCACTTAACATCTCACAGGTGGACTCACACTGGAGAAAAACCTCACTCCTGTGATATATGTCAGGCTAAATTTGTACAGAAAGGCCACTTAATAAATCACACTAGGATACACACTGGGGAAAAGCCTTATTCCTGTGATATATGTCAGGCTAAATTTGCACGAAAATATAATTTAGCTACTCACATGTGGTCTCACTCTGAGCAGAAACCAATTTCTTGTGATCAGTGTCAGGCCAAATTTACGCATAAGTTTACTTTAACTCGCCATATGCGGATTCACACTGGCGAACTACCTTATTCCTGTGACCAATGCCAGAGTAAATTTAGACGTAAAAGCACTTTAATTTTTCATATGAGTAGCCACACTGGCTCTGGTGACAGACCTTATTCCTGTGATATATGTCAGAGAAACTTTATACGAAAACAACAATTGACCATTCATATGAGGGCCCACACTGGTAACAAACCTTTTTCTTGTAACATATGTCTGCTAAAATTCGCATTTAAATTTAATTTGACTAGCCACATGAACACTCACCTTGGAGATAAATCTCTTACTTGTAAAATTTGTTCGAAAAAATTTACACGTAAAAGTAGCCTTAAAACTCACATGAAGTCTCACACTGGTGAAAAACCTTATTCTTGTGGCCAATGCCAAAGGAAATTTACACAAAAAGTTACTTTAATTGCTCATACAAGGACTCACACTGGTGAAAAACCTTTTTCTTGTGATCATTGTCAAAGGAAATTTACACAAAAAAGTACTTTAACTGCTCACATGAGGATATGCTCATTTGCGTGA
Protein Sequence
MEEQLVIPKEEMLEEEHNIITVEFECEDNKGFIVPIQEYSNTSQPLDSADSDQQIDNMLIVPKEEIIVLKEELPHLSPHQDSANSDQQMVNIFLPIKTETIISKEVAELQKTQMSSADTDLFAGCPTTYIKWEPSQTEASLPTDVTQTLASTSRHERPQNQIDRAAEIKDLPSGNVSEEIRTSKSASLLHKIEKGTDKKPHACHLCQASFLHKSQLTAHITTHTRYKPHSCHICHAKFSYKSQLTTHLRTHTGDKPYSCDICQAKFVQKHHLTTHSRIHTGEKPYSCDICEAKFAHKHSLTTHNRIHTGEKPYACDKCQAKFVQKTQLTTHIKRTHIGDKPHSCDICQAKFAHKSYLITHSKAHTGGKPYSCDICQAKFLYKSQLTTHSRIHTGDKPYSCDICQAKFVQKCHLATHIRTHTGEKPYSCDICQAKFSLKSHLTSHRWTHTGEKPHSCDICQAKFVQKGHLINHTRIHTGEKPYSCDICQAKFARKYNLATHMWSHSEQKPISCDQCQAKFTHKFTLTRHMRIHTGELPYSCDQCQSKFRRKSTLIFHMSSHTGSGDRPYSCDICQRNFIRKQQLTIHMRAHTGNKPFSCNICLLKFAFKFNLTSHMNTHLGDKSLTCKICSKKFTRKSSLKTHMKSHTGEKPYSCGQCQRKFTQKVTLIAHTRTHTGEKPFSCDHCQRKFTQKSTLTAHMRICSFA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-