Mjur019107.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995226.1:1793088-1802843[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 6.1e-05 0.0028 18.4 5.1 1 23 441 463 441 463 0.99 2 21 0.00054 0.025 15.4 6.3 1 23 469 491 469 491 0.98 3 21 2.1e-05 0.00097 19.8 1.7 1 23 497 519 497 519 0.99 4 21 0.003 0.14 13.1 2.1 1 23 525 547 525 547 0.97 5 21 6.3e-05 0.0029 18.3 0.6 1 23 553 575 553 575 0.98 6 21 0.0026 0.12 13.2 1.8 1 23 581 603 581 603 0.97 7 21 1.5e-05 0.00068 20.3 0.8 1 23 609 631 609 631 0.98 8 21 0.0008 0.037 14.9 1.5 1 23 637 659 637 659 0.98 9 21 0.00017 0.0081 16.9 2.4 1 23 665 687 665 687 0.98 10 21 1.1e-05 0.00051 20.7 3.2 1 23 693 715 693 715 0.98 11 21 0.061 2.8 8.9 0.6 8 23 851 866 850 866 0.95 12 21 0.00019 0.0089 16.8 6.6 1 23 872 894 872 894 0.98 13 21 2.1e-05 0.00097 19.8 1.7 1 23 900 922 900 922 0.99 14 21 0.00011 0.005 17.6 4.7 1 23 928 950 928 950 0.98 15 21 0.00031 0.014 16.1 2.6 1 23 956 978 956 978 0.98 16 21 0.0011 0.052 14.4 3.9 1 23 984 1006 984 1006 0.98 17 21 0.00018 0.0084 16.9 4.1 1 23 1012 1034 1012 1034 0.98 18 21 7e-05 0.0032 18.2 0.8 1 23 1040 1062 1040 1062 0.98 19 21 6.8e-05 0.0031 18.2 0.2 1 23 1068 1090 1068 1090 0.98 20 21 0.0006 0.028 15.3 3.1 1 23 1096 1118 1096 1118 0.98 21 21 0.0013 0.062 14.2 1.2 1 23 1124 1146 1124 1146 0.97
Sequence Information
- Coding Sequence
- ATGCGGTGTTTTGTGCCTTTCTGCAAAAACACTTCGGACAATGTAACCACATCAGAGGGGGATAAGAGGATTAGTTTTCATCGTTTTCCCAGTGAAATGCATCTCCGTGTTTCTTGGCTTAGAGCCCTCGGCAAACAAGACAACTTGCCCGACACTGCTGTGGTATGCTCACAGCATTTTCTGAATGAAGACATTTATGAAACGGAAAGTGGTTTAAGGCAAATTGGTCCTGGTGCTATTCCTTCAACAGTGCAGGTATGCGTAATATGCCTAGACACTGACAGTAAGCTGTTTCTCATGGGTAAACACAAATTGAAAGATGCATATGAAAAGTTAACTGGACATCCTTTGTGTGATCAAGGAAACCTAAAACAAACACTCTGCGTGCAATGTGTGCACAAATTGATAAACTTTAGTAGATTTAGGGAGAAGAGCTTGAGAGCCCGTGCACTGATGATGGACTTAGTTGAAAAACATGAATTGATAACAAGACGACATATCAAAATGATAAACCGCACAAAACACCAACTAAAGAGTAATATGGTGATGACAATGCTAGAACCTGACCACTGTGACTTACACATACTAGAAAACATCTCAGAAGACGGTCAACCAGAATTAGAGGAAACTAGACAGATTATAGTGAAAAACGAAGATAGTGATGACTCTATGTCGGTTGATGAGGTCATGGAAGTGATCAATGAATATGACAATTTTACAGACAGTGTCAAAGAGGAGTTTGTAGCTAGTGATGATGACAAATCTAAGGACGATGACGTCGATGGCGAATGTGACACGTCGCTAGTATGCAATCCTCATACAGCTGCGATCTCTAGCTCTTCACACTCTTCACTCATCACTGAGAACAGGCAGGCAGATTCCAGCTCTCCCGCACTCGCGGCGCAGGCCTCTGACGCTCCTCTGTCCGCGAATGTTGCGACAAATAACGAAGTAAAAGTGCCCCCCACTGATGAAACCGATACAAATGTCAATTATTGCCGATACAATATGTTAAAAGATTGTGTTGTCAAATTATGCGATATTTTCTCTAAGAAAGTTGTATCAAAACGAGACGGATCGCTGACGAAAACACGGAAACGCGTTAGGTCTTGTGTCAATCGGAACACTGTGTCTGAACATATCAGTTACCATGCAGCAAGTCAGAATGAAGTTCCTACGGCAGAATATGTTGAATCAGTCGATACTGCAAAAGTAATTGTTCCGAAAACTTTTCAAAGTAAAACTAATTGTTCAAAAAATGTCATCAATAAACAATTTAATAATTCGTTACAAAATAGTTCACACACTGAGGAAAGGTGGTTCACTTGTGACAATTGTAGAAAAATGTGTAAACGAAAAAGTCTCTTAGTTAAACACATAAAAACTCACGCTGAAGTAATGTGGTTCACATGCAAGATTTGCCAGTACAAATGTAAATATCAAAGCCGTTTGAAGACGCATATGCGAATTCACACGGATGTAAAACCTTTTACGTGCAAGTTATGTGATTACAAATCTGCATACAATAGCAGTCTAGTGAGGCACATGAGGACCCACACTGGTGAAAAGCCTCATTATTGTACATCATGCAAATACAAATCTGCCACTAATGGTGACTTATTAATTCATATGAGAACTCACACTGGCGAAAAGCCATTTATTTGTATGTTATGTGATTACAAATCTGCACAGAATAGCAGTCTAGTGAGGCACATGAGGACCCACACTGGTGAAAAGCCTCATTATTGTACATCATGCAAATACAAATCTGCCACTAATGGTGACTTAGTAATTCATATGAGAACTCACACTGGCGAAAAGCCATTTATTTGTACGTTATGTGATTACAAATCTGCACAGAATAGCAGTCTAGTGAGGCACATGAGGACCCACACTGGTGAAAAGCCTCATTATTGTACATTATGCAAATACAAATCTGCCACTAATGGTGACTTAGTAATTCATATGAGAACTCACACTGGCGAAAAGCCATTTATTTGTACGTTATGTGATTACAAATGTGCCAGAAATTTTGAATTAGTAAGTCATATGAGGACCCACACTGGCGAAAAGCCATTTATTTGTACGTTATGTGATTACAAATCTACACAGAGTAGTCATCTAGTGAGGCACATGAGAACCCATACTGGTGAAAAGCCTCATTATTGTAAATTATGCAAATACAAATCTGCCACTAATGTCGCTCCTCTGTCTGCGAGACTTGCGACAGATAATGAAGACAAAGAGCCAGAAAATGGATATACCGATGCAGTGCGGGAAAGTAACCCAATATTCGAAATTGACAATGACGAAATCGAAAGCCAAACATCAGATATCAGTTGTAAAAGGAATATAAACATTAATAAATTAACAAATTGCATAGTTAAATTATACGACGTTTTCAAATCCCCTATGAAATGTGTCAACCGGAATATTGCGTCTAAAGATATCAGTTATCATGCAACAAGTCAGAATGAAGTCCCTACAAGAGAACACGTTGAACCAGTTATTAATGCAGAAAAAGTAATTGTATCGAAAACTTTTCAAAGCAAAATGTGTAAACGAAAAAGTCTCTTAGTTAAACATATAAAAACTCACGCTGAAGTAACGTGGTTCACATGCAAGATTTGCCAGTACAAATGTAAATATCAAAGCCGTTTGAAGAGGCATATGCGAATTCACACGGATGTAAAACCTTTTACGTGCAAGTTATGTGATTACAAATCTGCATACAATAGCAGTCTAGTGAGGCACATGAGGACCCACACTGGTGAAAAGCCATTTATTTGTACGTTATGTGATTACAAATGTGCACAAAATAACCATCTAGTGAGGCACATGAGGACCCACACTGGTGAAAAGCCTCATTATTGTAAATTATGCAAATACAAATCTGCCACTAAAGGTAACTTAGTAATTCATATGAGAACTCACACCGGCGAAAAGCCATTTAATTGTAAATTATGCAAATACAAATGTGCCAAAAATAGTGGCTTAGTAACTCATATGAGAACTCACACTGGCGAAAAGCCATATTTCTGTAAGATATGCGAGTACAAATGTTCGTATAGAAATAATCTAATAGAGCACATGAGAACCCATACTAGTGAAAAGCCATTTAATTGTACGTTATGTGATTACAAATCTGCACAGAATGGCAGTCTAGTGAAGCACATGAGAACCCACACTGGTGAAAAGCCATTTATTTGTGGGTTATGTGATTTTAAATCTGTAAGCAATAGTAATCTAGTGGCGCATATGAGAACCCACACTGGTGAAAAGCCTCATTATTGTAAATTATGCAAATACAAATCTGCCAGAAATAGCGGCTTAGTAAATCATATGAGAACTCACACTGGCGAAAAGCCATTTATTTGTACGTTATGTGATTACAAATCTGCACACAAAATCAGTCTAGTGAAGCACATGAGAGCACACACTGGTGAAACGTCTTCACCATATTCGTGA
- Protein Sequence
- MRCFVPFCKNTSDNVTTSEGDKRISFHRFPSEMHLRVSWLRALGKQDNLPDTAVVCSQHFLNEDIYETESGLRQIGPGAIPSTVQVCVICLDTDSKLFLMGKHKLKDAYEKLTGHPLCDQGNLKQTLCVQCVHKLINFSRFREKSLRARALMMDLVEKHELITRRHIKMINRTKHQLKSNMVMTMLEPDHCDLHILENISEDGQPELEETRQIIVKNEDSDDSMSVDEVMEVINEYDNFTDSVKEEFVASDDDKSKDDDVDGECDTSLVCNPHTAAISSSSHSSLITENRQADSSSPALAAQASDAPLSANVATNNEVKVPPTDETDTNVNYCRYNMLKDCVVKLCDIFSKKVVSKRDGSLTKTRKRVRSCVNRNTVSEHISYHAASQNEVPTAEYVESVDTAKVIVPKTFQSKTNCSKNVINKQFNNSLQNSSHTEERWFTCDNCRKMCKRKSLLVKHIKTHAEVMWFTCKICQYKCKYQSRLKTHMRIHTDVKPFTCKLCDYKSAYNSSLVRHMRTHTGEKPHYCTSCKYKSATNGDLLIHMRTHTGEKPFICMLCDYKSAQNSSLVRHMRTHTGEKPHYCTSCKYKSATNGDLVIHMRTHTGEKPFICTLCDYKSAQNSSLVRHMRTHTGEKPHYCTLCKYKSATNGDLVIHMRTHTGEKPFICTLCDYKCARNFELVSHMRTHTGEKPFICTLCDYKSTQSSHLVRHMRTHTGEKPHYCKLCKYKSATNVAPLSARLATDNEDKEPENGYTDAVRESNPIFEIDNDEIESQTSDISCKRNININKLTNCIVKLYDVFKSPMKCVNRNIASKDISYHATSQNEVPTREHVEPVINAEKVIVSKTFQSKMCKRKSLLVKHIKTHAEVTWFTCKICQYKCKYQSRLKRHMRIHTDVKPFTCKLCDYKSAYNSSLVRHMRTHTGEKPFICTLCDYKCAQNNHLVRHMRTHTGEKPHYCKLCKYKSATKGNLVIHMRTHTGEKPFNCKLCKYKCAKNSGLVTHMRTHTGEKPYFCKICEYKCSYRNNLIEHMRTHTSEKPFNCTLCDYKSAQNGSLVKHMRTHTGEKPFICGLCDFKSVSNSNLVAHMRTHTGEKPHYCKLCKYKSARNSGLVNHMRTHTGEKPFICTLCDYKSAHKISLVKHMRAHTGETSSPYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -